Top 10 genes with highest correlation to Rv1049/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0178/- | (cc=0.4306) | info on Rv0178/- |
| Rv2229c/- | (cc=0.4059) | info on Rv2229c/- |
| Rv1325c/PE_PGRS24 | (cc=0.4039) | info on Rv1325c/PE_PGRS24 |
| Rv3549c/- | (cc=0.4006) | info on Rv3549c/- |
| Rv0541c/- | (cc=0.3995) | info on Rv0541c/- |
| Rv3229c/desA3 | (cc=0.3963) | info on Rv3229c/desA3 |
| Rv0199/- | (cc=0.3842) | info on Rv0199/- |
| Rv3072c/- | (cc=0.3748) | info on Rv3072c/- |
| Rv3913/trxB2 | (cc=0.3744) | info on Rv3913/trxB2 |
| Rv2271/- | (cc=0.3716) | info on Rv2271/- |
Correlation of Rv1049/- with Rv0199/-
Normalized LFCs for Rv1049/-:
(description and provenance of datasets)
| Rv1049/- | Rv0199/- | |
| Fe_supp_jason_reseq | 1.435 | 0.841 |
| low_pH_jason_reseq | 1.566 | 0.723 |
| NO_jason_reseq | 2.116 | 1.762 |
| B6_jason_reseq | -0.889 | -1.774 |
| MHCII_jason_reseq | -1.04 | -2.46 |
| Isoniazid02 | -0.501 | -0.226 |
| Rifampicin4 | 0.661 | 1.449 |
| Ethambutol3 | 0.9 | -0.641 |
| Meropenem3 | -0.254 | 1.031 |
| Vancomycin16 | 0.329 | 1.828 |
| Rv2680_day32 | -0.386 | -3.021 |
| H37Rv_KO_MarP | 0.078 | 1.243 |
| hypoxia_3wks | 0.817 | 2.528 |
| hypoxia_6wks | 0.221 | 2.99 |
| glycerol | -0.772 | -0.607 |
| cholesterol | -0.292 | -1.345 |
| AJ | -0.998 | -4.548 |
| Bibs02 | -1.552 | -4.036 |
| Bibs02c | -1.234 | -5.106 |
| BL6 | -0.563 | -0.391 |
| BL6a | -1.191 | -2.937 |
| BXD01 | 0.482 | -1.034 |
| BXD010 | -0.017 | -0.765 |
| BXD011 | 0.291 | -0.234 |
| BXD03 | -0.637 | -0.87 |
| BXD04 | 0.855 | -1.369 |
| BXD05 | -0.091 | -0.804 |
| BXD06 | 0.076 | -0.88 |
| BXD07 | 0.507 | 0.112 |
| BXD08 | 1.06 | -0.525 |
| BXD09 | 0.399 | -1.066 |
| CAST | -0.03 | -2.785 |
| CCcont | -0.265 | -0.275 |
| DS01 | -0.015 | -3.673 |
| DS02 | 0.814 | -0.832 |
| DS04 | 0.921 | -1.13 |
| DS0c | -0.352 | -2.681 |
| GP01 | -0.665 | -2.179 |
| GP02 | 0.163 | -2.107 |
| GP0c | -0.497 | -0.279 |
| NOD | 0.841 | -1.783 |
| NZO | 0.09 | -2.823 |
| PWK | -0.132 | -3.125 |
| H37Rv_KO_CtpC | -0.575 | -2.861 |
| H37Rv_KO_CtpD | 0.52 | -0.738 |
| H37Rv_KO_Rv1272 | 0.721 | 0.533 |
| H37Rv_KO_SugABC | 1.351 | 0.836 |
| H37Rv_KO_MbtN | -0.128 | -0.035 |
| Trans05 | -0.669 | -1.893 |
| macrophage_unactivated | 2.039 | -1.815 |
| IL1 | -0.039 | 2.073 |
| Rapamycin | -0.663 | 0.724 |
| Tcell | 0.316 | -1.733 |
| GMCSF | -1.89 | -0.106 |
| IFNab | -0.744 | -0.964 |
| IFNg | 0.259 | -0.446 |
| IFNg_GMCSF1 | 0.487 | -0.776 |
| Rv1432_day32 | 0.08 | -3.95 |
| Rv1565c_day32 | -0.799 | -3.657 |
| secA2_input | -0.767 | 0.255 |
| delta_Rv3594 | 0.613 | 0.015 |
| delta_Rv3717 | 1.971 | 0.327 |
| delta_Rv3811 | 1.899 | -0.348 |
| delta_Rv0954 | 0.849 | -0.363 |
| PonA1 | 0.731 | 0.679 |
| EccD1_KO | -0.569 | 0.204 |
| EspI_KO | -1.492 | 0.528 |
| PE35_KO | -0.893 | -0.566 |
| PPE68_KO | -0.352 | 0.0 |
| glycerol2 | 0.46 | -1.454 |
| lignocerate | 0.481 | -2.435 |
| oleate | 1.099 | 0.252 |
| phosphatidylcholine | 0.901 | -1.454 |
| acetate | -0.203 | -0.376 |
| glucAc | 0.84 | -0.256 |
| Rv0950ko | 0.286 | -0.368 |
| Rv1096ko | 1.312 | 0.051 |
| Rv3684ko | 0.557 | -0.773 |
| delta_otsA_trehalose | 1.043 | 0.23 |