Top 10 genes with highest correlation to Rv1049/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0178/- | (cc=0.4306) | info on Rv0178/- |
| Rv2229c/- | (cc=0.4059) | info on Rv2229c/- |
| Rv1325c/PE_PGRS24 | (cc=0.4039) | info on Rv1325c/PE_PGRS24 |
| Rv3549c/- | (cc=0.4006) | info on Rv3549c/- |
| Rv0541c/- | (cc=0.3995) | info on Rv0541c/- |
| Rv3229c/desA3 | (cc=0.3963) | info on Rv3229c/desA3 |
| Rv0199/- | (cc=0.3842) | info on Rv0199/- |
| Rv3072c/- | (cc=0.3748) | info on Rv3072c/- |
| Rv3913/trxB2 | (cc=0.3744) | info on Rv3913/trxB2 |
| Rv2271/- | (cc=0.3716) | info on Rv2271/- |
Correlation of Rv1049/- with Rv3229c/desA3
Normalized LFCs for Rv1049/-:
(description and provenance of datasets)
| Rv1049/- | Rv3229c/desA3 | |
| Fe_supp_jason_reseq | 1.435 | 1.318 |
| low_pH_jason_reseq | 1.566 | -1.283 |
| NO_jason_reseq | 2.116 | -0.242 |
| B6_jason_reseq | -0.889 | 0.017 |
| MHCII_jason_reseq | -1.04 | 0.538 |
| Isoniazid02 | -0.501 | -0.215 |
| Rifampicin4 | 0.661 | -0.523 |
| Ethambutol3 | 0.9 | -0.473 |
| Meropenem3 | -0.254 | -0.851 |
| Vancomycin16 | 0.329 | 0.769 |
| Rv2680_day32 | -0.386 | -1.084 |
| H37Rv_KO_MarP | 0.078 | -1.983 |
| hypoxia_3wks | 0.817 | 1.304 |
| hypoxia_6wks | 0.221 | -0.56 |
| glycerol | -0.772 | -3.397 |
| cholesterol | -0.292 | -3.361 |
| AJ | -0.998 | -0.666 |
| Bibs02 | -1.552 | -2.394 |
| Bibs02c | -1.234 | -1.035 |
| BL6 | -0.563 | 0.817 |
| BL6a | -1.191 | -1.118 |
| BXD01 | 0.482 | -0.426 |
| BXD010 | -0.017 | -0.505 |
| BXD011 | 0.291 | 0.9 |
| BXD03 | -0.637 | -0.605 |
| BXD04 | 0.855 | -0.498 |
| BXD05 | -0.091 | 0.296 |
| BXD06 | 0.076 | -0.352 |
| BXD07 | 0.507 | -0.292 |
| BXD08 | 1.06 | -0.608 |
| BXD09 | 0.399 | -0.169 |
| CAST | -0.03 | -0.734 |
| CCcont | -0.265 | -0.159 |
| DS01 | -0.015 | -1.963 |
| DS02 | 0.814 | -1.987 |
| DS04 | 0.921 | -1.036 |
| DS0c | -0.352 | -1.433 |
| GP01 | -0.665 | 0.61 |
| GP02 | 0.163 | -0.504 |
| GP0c | -0.497 | -0.209 |
| NOD | 0.841 | 0.026 |
| NZO | 0.09 | -1.026 |
| PWK | -0.132 | -0.689 |
| H37Rv_KO_CtpC | -0.575 | -0.698 |
| H37Rv_KO_CtpD | 0.52 | 0.819 |
| H37Rv_KO_Rv1272 | 0.721 | 0.254 |
| H37Rv_KO_SugABC | 1.351 | 1.068 |
| H37Rv_KO_MbtN | -0.128 | -0.076 |
| Trans05 | -0.669 | -1.121 |
| macrophage_unactivated | 2.039 | 1.736 |
| IL1 | -0.039 | -0.35 |
| Rapamycin | -0.663 | -1.317 |
| Tcell | 0.316 | -1.975 |
| GMCSF | -1.89 | 0.718 |
| IFNab | -0.744 | -0.29 |
| IFNg | 0.259 | 1.433 |
| IFNg_GMCSF1 | 0.487 | 0.097 |
| Rv1432_day32 | 0.08 | 0.554 |
| Rv1565c_day32 | -0.799 | -0.242 |
| secA2_input | -0.767 | -0.072 |
| delta_Rv3594 | 0.613 | 0.249 |
| delta_Rv3717 | 1.971 | 0.273 |
| delta_Rv3811 | 1.899 | 0.485 |
| delta_Rv0954 | 0.849 | 1.062 |
| PonA1 | 0.731 | 0.0 |
| EccD1_KO | -0.569 | -1.256 |
| EspI_KO | -1.492 | -1.417 |
| PE35_KO | -0.893 | -2.272 |
| PPE68_KO | -0.352 | -1.155 |
| glycerol2 | 0.46 | 0.643 |
| lignocerate | 0.481 | 0.662 |
| oleate | 1.099 | 0.241 |
| phosphatidylcholine | 0.901 | 0.929 |
| acetate | -0.203 | 0.763 |
| glucAc | 0.84 | 1.236 |
| Rv0950ko | 0.286 | -0.464 |
| Rv1096ko | 1.312 | 0.087 |
| Rv3684ko | 0.557 | 0.075 |
| delta_otsA_trehalose | 1.043 | 0.591 |