Top 10 genes with highest correlation to Rv0401/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3197/- | (cc=0.5496) | info on Rv3197/- |
| Rv1480/- | (cc=0.5411) | info on Rv1480/- |
| Rv3535c/hsaG | (cc=0.5302) | info on Rv3535c/hsaG |
| Rv2606c/snzP | (cc=0.525) | info on Rv2606c/snzP |
| Rv1405c/- | (cc=0.5227) | info on Rv1405c/- |
| Rv0493c/- | (cc=0.5137) | info on Rv0493c/- |
| Rv1174c/TB8.4 | (cc=0.5096) | info on Rv1174c/TB8.4 |
| Rv1235/lpqY | (cc=0.5009) | info on Rv1235/lpqY |
| Rv3873/PPE68 | (cc=0.4991) | info on Rv3873/PPE68 |
| Rv1589/bioB | (cc=0.4966) | info on Rv1589/bioB |
Correlation of Rv0401/- with Rv3873/PPE68
Normalized LFCs for Rv0401/-:
(description and provenance of datasets)
| Rv0401/- | Rv3873/PPE68 | |
| Fe_supp_jason_reseq | -1.92 | 0.444 |
| low_pH_jason_reseq | -0.704 | -0.403 |
| NO_jason_reseq | 0.095 | -0.662 |
| B6_jason_reseq | -1.303 | -1.598 |
| MHCII_jason_reseq | 0.275 | -1.761 |
| Isoniazid02 | 0.435 | 0.007 |
| Rifampicin4 | -0.477 | -0.087 |
| Ethambutol3 | -0.406 | 0.998 |
| Meropenem3 | -0.167 | 0.111 |
| Vancomycin16 | 0.172 | 0.042 |
| Rv2680_day32 | -3.878 | -0.947 |
| H37Rv_KO_MarP | 1.445 | 0.785 |
| hypoxia_3wks | 0.399 | 0.0 |
| hypoxia_6wks | 0.998 | 0.355 |
| glycerol | -0.29 | -0.165 |
| cholesterol | -0.238 | 0.427 |
| AJ | -1.966 | -4.457 |
| Bibs02 | 1.42 | -4.162 |
| Bibs02c | -0.55 | -3.966 |
| BL6 | -0.497 | -1.83 |
| BL6a | -1.124 | -3.833 |
| BXD01 | -3.1 | -3.063 |
| BXD010 | -2.582 | -1.593 |
| BXD011 | -2.287 | -2.995 |
| BXD03 | -1.289 | -1.332 |
| BXD04 | -2.84 | -3.036 |
| BXD05 | -1.253 | -2.551 |
| BXD06 | -0.621 | -2.48 |
| BXD07 | -2.792 | -3.077 |
| BXD08 | -2.951 | -2.702 |
| BXD09 | -0.541 | -3.224 |
| CAST | -1.73 | -3.615 |
| CCcont | -1.755 | -0.331 |
| DS01 | -2.099 | -2.97 |
| DS02 | -1.757 | -3.375 |
| DS04 | -1.893 | -1.613 |
| DS0c | -3.894 | -3.446 |
| GP01 | -1.476 | -1.776 |
| GP02 | -1.127 | -1.849 |
| GP0c | -1.458 | -0.995 |
| NOD | -2.639 | -2.491 |
| NZO | -3.218 | -5.033 |
| PWK | -1.142 | -3.719 |
| H37Rv_KO_CtpC | -3.085 | -1.427 |
| H37Rv_KO_CtpD | 0.54 | -1.832 |
| H37Rv_KO_Rv1272 | -1.167 | -2.1 |
| H37Rv_KO_SugABC | -2.448 | -0.055 |
| H37Rv_KO_MbtN | -1.85 | -0.169 |
| Trans05 | -2.108 | -1.426 |
| macrophage_unactivated | 3.156 | -0.764 |
| IL1 | 0.151 | -0.027 |
| Rapamycin | -0.16 | 0.454 |
| Tcell | 0.772 | -1.61 |
| GMCSF | 0.958 | -0.095 |
| IFNab | 1.971 | 1.306 |
| IFNg | 3.065 | -0.775 |
| IFNg_GMCSF1 | 2.536 | -0.471 |
| Rv1432_day32 | -1.618 | -1.657 |
| Rv1565c_day32 | 0.0 | -3.574 |
| secA2_input | 2.951 | -0.142 |
| delta_Rv3594 | -2.177 | 0.104 |
| delta_Rv3717 | -1.419 | -0.792 |
| delta_Rv3811 | -0.399 | -0.058 |
| delta_Rv0954 | -0.947 | -0.403 |
| PonA1 | 0.11 | -0.629 |
| EccD1_KO | -1.378 | -0.789 |
| EspI_KO | -2.818 | -0.896 |
| PE35_KO | -3.325 | -6.0 |
| PPE68_KO | -2.582 | -3.516 |
| glycerol2 | 0.0 | 0.418 |
| lignocerate | 0.0 | 0.644 |
| oleate | 0.0 | 0.006 |
| phosphatidylcholine | 0.368 | 0.272 |
| acetate | 0.0 | -0.535 |
| glucAc | 1.034 | 0.108 |
| Rv0950ko | 1.095 | 0.142 |
| Rv1096ko | 2.548 | 0.066 |
| Rv3684ko | 0.0 | 0.344 |
| delta_otsA_trehalose | 0.0 | 0.887 |