Top 10 genes with highest correlation to Rv0401/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3197/- | (cc=0.5496) | info on Rv3197/- |
| Rv1480/- | (cc=0.5411) | info on Rv1480/- |
| Rv3535c/hsaG | (cc=0.5302) | info on Rv3535c/hsaG |
| Rv2606c/snzP | (cc=0.525) | info on Rv2606c/snzP |
| Rv1405c/- | (cc=0.5227) | info on Rv1405c/- |
| Rv0493c/- | (cc=0.5137) | info on Rv0493c/- |
| Rv1174c/TB8.4 | (cc=0.5096) | info on Rv1174c/TB8.4 |
| Rv1235/lpqY | (cc=0.5009) | info on Rv1235/lpqY |
| Rv3873/PPE68 | (cc=0.4991) | info on Rv3873/PPE68 |
| Rv1589/bioB | (cc=0.4966) | info on Rv1589/bioB |
Correlation of Rv0401/- with Rv0493c/-
Normalized LFCs for Rv0401/-:
(description and provenance of datasets)
| Rv0401/- | Rv0493c/- | |
| Fe_supp_jason_reseq | -1.92 | -0.164 |
| low_pH_jason_reseq | -0.704 | -0.937 |
| NO_jason_reseq | 0.095 | -0.501 |
| B6_jason_reseq | -1.303 | 0.031 |
| MHCII_jason_reseq | 0.275 | 0.074 |
| Isoniazid02 | 0.435 | 0.106 |
| Rifampicin4 | -0.477 | -0.352 |
| Ethambutol3 | -0.406 | 0.721 |
| Meropenem3 | -0.167 | 0.313 |
| Vancomycin16 | 0.172 | -0.135 |
| Rv2680_day32 | -3.878 | -0.758 |
| H37Rv_KO_MarP | 1.445 | 0.677 |
| hypoxia_3wks | 0.399 | 0.0 |
| hypoxia_6wks | 0.998 | 0.716 |
| glycerol | -0.29 | -0.705 |
| cholesterol | -0.238 | -0.449 |
| AJ | -1.966 | 0.429 |
| Bibs02 | 1.42 | 0.212 |
| Bibs02c | -0.55 | 0.303 |
| BL6 | -0.497 | 0.012 |
| BL6a | -1.124 | 0.009 |
| BXD01 | -3.1 | -0.944 |
| BXD010 | -2.582 | 0.104 |
| BXD011 | -2.287 | -0.272 |
| BXD03 | -1.289 | -0.113 |
| BXD04 | -2.84 | -0.473 |
| BXD05 | -1.253 | -0.359 |
| BXD06 | -0.621 | -0.423 |
| BXD07 | -2.792 | -0.647 |
| BXD08 | -2.951 | -0.104 |
| BXD09 | -0.541 | -0.124 |
| CAST | -1.73 | -0.088 |
| CCcont | -1.755 | -0.591 |
| DS01 | -2.099 | 0.455 |
| DS02 | -1.757 | 0.436 |
| DS04 | -1.893 | 0.208 |
| DS0c | -3.894 | 0.55 |
| GP01 | -1.476 | -0.228 |
| GP02 | -1.127 | -0.253 |
| GP0c | -1.458 | 0.188 |
| NOD | -2.639 | -0.799 |
| NZO | -3.218 | 0.065 |
| PWK | -1.142 | 0.064 |
| H37Rv_KO_CtpC | -3.085 | -0.783 |
| H37Rv_KO_CtpD | 0.54 | 0.293 |
| H37Rv_KO_Rv1272 | -1.167 | -0.669 |
| H37Rv_KO_SugABC | -2.448 | -0.515 |
| H37Rv_KO_MbtN | -1.85 | -0.806 |
| Trans05 | -2.108 | -0.71 |
| macrophage_unactivated | 3.156 | 0.136 |
| IL1 | 0.151 | 0.202 |
| Rapamycin | -0.16 | 0.577 |
| Tcell | 0.772 | 0.114 |
| GMCSF | 0.958 | 0.393 |
| IFNab | 1.971 | 0.051 |
| IFNg | 3.065 | 0.604 |
| IFNg_GMCSF1 | 2.536 | 1.282 |
| Rv1432_day32 | -1.618 | 0.184 |
| Rv1565c_day32 | 0.0 | 0.118 |
| secA2_input | 2.951 | 0.858 |
| delta_Rv3594 | -2.177 | 0.54 |
| delta_Rv3717 | -1.419 | 0.342 |
| delta_Rv3811 | -0.399 | 0.404 |
| delta_Rv0954 | -0.947 | 0.444 |
| PonA1 | 0.11 | -0.233 |
| EccD1_KO | -1.378 | 0.332 |
| EspI_KO | -2.818 | -0.288 |
| PE35_KO | -3.325 | -0.248 |
| PPE68_KO | -2.582 | -0.349 |
| glycerol2 | 0.0 | 0.115 |
| lignocerate | 0.0 | 0.569 |
| oleate | 0.0 | -0.922 |
| phosphatidylcholine | 0.368 | 0.115 |
| acetate | 0.0 | 0.203 |
| glucAc | 1.034 | 0.385 |
| Rv0950ko | 1.095 | 0.181 |
| Rv1096ko | 2.548 | 1.218 |
| Rv3684ko | 0.0 | 0.115 |
| delta_otsA_trehalose | 0.0 | 0.533 |