Top 10 genes with highest correlation to Rv0401/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3197/- | (cc=0.5496) | info on Rv3197/- |
| Rv1480/- | (cc=0.5411) | info on Rv1480/- |
| Rv3535c/hsaG | (cc=0.5302) | info on Rv3535c/hsaG |
| Rv2606c/snzP | (cc=0.525) | info on Rv2606c/snzP |
| Rv1405c/- | (cc=0.5227) | info on Rv1405c/- |
| Rv0493c/- | (cc=0.5137) | info on Rv0493c/- |
| Rv1174c/TB8.4 | (cc=0.5096) | info on Rv1174c/TB8.4 |
| Rv1235/lpqY | (cc=0.5009) | info on Rv1235/lpqY |
| Rv3873/PPE68 | (cc=0.4991) | info on Rv3873/PPE68 |
| Rv1589/bioB | (cc=0.4966) | info on Rv1589/bioB |
Correlation of Rv0401/- with Rv1174c/TB8.4
Normalized LFCs for Rv0401/-:
(description and provenance of datasets)
| Rv0401/- | Rv1174c/TB8.4 | |
| Fe_supp_jason_reseq | -1.92 | 1.006 |
| low_pH_jason_reseq | -0.704 | -1.074 |
| NO_jason_reseq | 0.095 | -0.659 |
| B6_jason_reseq | -1.303 | -1.19 |
| MHCII_jason_reseq | 0.275 | -1.116 |
| Isoniazid02 | 0.435 | 0.474 |
| Rifampicin4 | -0.477 | -2.117 |
| Ethambutol3 | -0.406 | -0.251 |
| Meropenem3 | -0.167 | -0.256 |
| Vancomycin16 | 0.172 | -0.557 |
| Rv2680_day32 | -3.878 | -3.066 |
| H37Rv_KO_MarP | 1.445 | 0.477 |
| hypoxia_3wks | 0.399 | 5.068 |
| hypoxia_6wks | 0.998 | 1.539 |
| glycerol | -0.29 | 0.746 |
| cholesterol | -0.238 | -0.354 |
| AJ | -1.966 | -1.479 |
| Bibs02 | 1.42 | 0.076 |
| Bibs02c | -0.55 | -0.84 |
| BL6 | -0.497 | -1.805 |
| BL6a | -1.124 | -1.113 |
| BXD01 | -3.1 | -2.645 |
| BXD010 | -2.582 | -1.507 |
| BXD011 | -2.287 | -1.303 |
| BXD03 | -1.289 | -1.511 |
| BXD04 | -2.84 | -1.871 |
| BXD05 | -1.253 | -1.719 |
| BXD06 | -0.621 | -2.136 |
| BXD07 | -2.792 | -1.768 |
| BXD08 | -2.951 | -1.725 |
| BXD09 | -0.541 | -2.16 |
| CAST | -1.73 | -2.898 |
| CCcont | -1.755 | -0.587 |
| DS01 | -2.099 | -1.305 |
| DS02 | -1.757 | -0.424 |
| DS04 | -1.893 | -2.351 |
| DS0c | -3.894 | -0.889 |
| GP01 | -1.476 | -2.627 |
| GP02 | -1.127 | -2.629 |
| GP0c | -1.458 | -2.048 |
| NOD | -2.639 | -1.577 |
| NZO | -3.218 | -1.734 |
| PWK | -1.142 | -2.431 |
| H37Rv_KO_CtpC | -3.085 | -0.994 |
| H37Rv_KO_CtpD | 0.54 | 1.407 |
| H37Rv_KO_Rv1272 | -1.167 | -1.005 |
| H37Rv_KO_SugABC | -2.448 | -1.452 |
| H37Rv_KO_MbtN | -1.85 | -1.268 |
| Trans05 | -2.108 | -1.288 |
| macrophage_unactivated | 3.156 | 0.54 |
| IL1 | 0.151 | -0.486 |
| Rapamycin | -0.16 | 0.697 |
| Tcell | 0.772 | 0.557 |
| GMCSF | 0.958 | 1.756 |
| IFNab | 1.971 | 0.671 |
| IFNg | 3.065 | 0.521 |
| IFNg_GMCSF1 | 2.536 | 0.245 |
| Rv1432_day32 | -1.618 | -2.86 |
| Rv1565c_day32 | 0.0 | -0.093 |
| secA2_input | 2.951 | 0.315 |
| delta_Rv3594 | -2.177 | -0.932 |
| delta_Rv3717 | -1.419 | -1.375 |
| delta_Rv3811 | -0.399 | -0.741 |
| delta_Rv0954 | -0.947 | 0.309 |
| PonA1 | 0.11 | -0.463 |
| EccD1_KO | -1.378 | 0.993 |
| EspI_KO | -2.818 | 0.739 |
| PE35_KO | -3.325 | 0.872 |
| PPE68_KO | -2.582 | 1.062 |
| glycerol2 | 0.0 | 0.632 |
| lignocerate | 0.0 | -0.356 |
| oleate | 0.0 | 0.292 |
| phosphatidylcholine | 0.368 | 0.924 |
| acetate | 0.0 | -0.14 |
| glucAc | 1.034 | -0.157 |
| Rv0950ko | 1.095 | 0.718 |
| Rv1096ko | 2.548 | 0.265 |
| Rv3684ko | 0.0 | -0.481 |
| delta_otsA_trehalose | 0.0 | -0.328 |