Top 10 genes with highest correlation to Rv0401/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3197/- | (cc=0.5496) | info on Rv3197/- |
| Rv1480/- | (cc=0.5411) | info on Rv1480/- |
| Rv3535c/hsaG | (cc=0.5302) | info on Rv3535c/hsaG |
| Rv2606c/snzP | (cc=0.525) | info on Rv2606c/snzP |
| Rv1405c/- | (cc=0.5227) | info on Rv1405c/- |
| Rv0493c/- | (cc=0.5137) | info on Rv0493c/- |
| Rv1174c/TB8.4 | (cc=0.5096) | info on Rv1174c/TB8.4 |
| Rv1235/lpqY | (cc=0.5009) | info on Rv1235/lpqY |
| Rv3873/PPE68 | (cc=0.4991) | info on Rv3873/PPE68 |
| Rv1589/bioB | (cc=0.4966) | info on Rv1589/bioB |
Correlation of Rv0401/- with Rv1589/bioB
Normalized LFCs for Rv0401/-:
(description and provenance of datasets)
| Rv0401/- | Rv1589/bioB | |
| Fe_supp_jason_reseq | -1.92 | 0.849 |
| low_pH_jason_reseq | -0.704 | -1.268 |
| NO_jason_reseq | 0.095 | 0.223 |
| B6_jason_reseq | -1.303 | -3.371 |
| MHCII_jason_reseq | 0.275 | -2.397 |
| Isoniazid02 | 0.435 | -1.656 |
| Rifampicin4 | -0.477 | 0.198 |
| Ethambutol3 | -0.406 | -0.174 |
| Meropenem3 | -0.167 | 1.255 |
| Vancomycin16 | 0.172 | -0.138 |
| Rv2680_day32 | -3.878 | -4.017 |
| H37Rv_KO_MarP | 1.445 | -0.392 |
| hypoxia_3wks | 0.399 | 0.227 |
| hypoxia_6wks | 0.998 | -0.42 |
| glycerol | -0.29 | -6.0 |
| cholesterol | -0.238 | -4.449 |
| AJ | -1.966 | -6.0 |
| Bibs02 | 1.42 | -5.616 |
| Bibs02c | -0.55 | -6.0 |
| BL6 | -0.497 | -3.718 |
| BL6a | -1.124 | -5.111 |
| BXD01 | -3.1 | -4.001 |
| BXD010 | -2.582 | -3.934 |
| BXD011 | -2.287 | -3.206 |
| BXD03 | -1.289 | -3.58 |
| BXD04 | -2.84 | -1.441 |
| BXD05 | -1.253 | -3.159 |
| BXD06 | -0.621 | -4.1 |
| BXD07 | -2.792 | -4.253 |
| BXD08 | -2.951 | -3.832 |
| BXD09 | -0.541 | -4.316 |
| CAST | -1.73 | -5.943 |
| CCcont | -1.755 | -0.025 |
| DS01 | -2.099 | -6.0 |
| DS02 | -1.757 | -6.0 |
| DS04 | -1.893 | -3.872 |
| DS0c | -3.894 | -6.0 |
| GP01 | -1.476 | -2.317 |
| GP02 | -1.127 | -1.832 |
| GP0c | -1.458 | 0.733 |
| NOD | -2.639 | -5.519 |
| NZO | -3.218 | -5.929 |
| PWK | -1.142 | -5.83 |
| H37Rv_KO_CtpC | -3.085 | -4.192 |
| H37Rv_KO_CtpD | 0.54 | -2.195 |
| H37Rv_KO_Rv1272 | -1.167 | -2.444 |
| H37Rv_KO_SugABC | -2.448 | -2.014 |
| H37Rv_KO_MbtN | -1.85 | -0.331 |
| Trans05 | -2.108 | -3.554 |
| macrophage_unactivated | 3.156 | 2.333 |
| IL1 | 0.151 | 0.181 |
| Rapamycin | -0.16 | -0.319 |
| Tcell | 0.772 | 1.492 |
| GMCSF | 0.958 | 1.706 |
| IFNab | 1.971 | 3.099 |
| IFNg | 3.065 | 0.353 |
| IFNg_GMCSF1 | 2.536 | -0.773 |
| Rv1432_day32 | -1.618 | -4.133 |
| Rv1565c_day32 | 0.0 | -4.498 |
| secA2_input | 2.951 | 0.099 |
| delta_Rv3594 | -2.177 | -0.112 |
| delta_Rv3717 | -1.419 | 0.152 |
| delta_Rv3811 | -0.399 | 0.345 |
| delta_Rv0954 | -0.947 | 0.181 |
| PonA1 | 0.11 | -0.118 |
| EccD1_KO | -1.378 | -0.257 |
| EspI_KO | -2.818 | -0.305 |
| PE35_KO | -3.325 | -0.414 |
| PPE68_KO | -2.582 | 0.07 |
| glycerol2 | 0.0 | 0.0 |
| lignocerate | 0.0 | 0.168 |
| oleate | 0.0 | 0.0 |
| phosphatidylcholine | 0.368 | 0.0 |
| acetate | 0.0 | 0.63 |
| glucAc | 1.034 | 0.392 |
| Rv0950ko | 1.095 | -0.434 |
| Rv1096ko | 2.548 | -0.112 |
| Rv3684ko | 0.0 | -0.868 |
| delta_otsA_trehalose | 0.0 | 1.462 |