Top 10 genes with highest correlation to Rv0401/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3197/- | (cc=0.5496) | info on Rv3197/- |
| Rv1480/- | (cc=0.5411) | info on Rv1480/- |
| Rv3535c/hsaG | (cc=0.5302) | info on Rv3535c/hsaG |
| Rv2606c/snzP | (cc=0.525) | info on Rv2606c/snzP |
| Rv1405c/- | (cc=0.5227) | info on Rv1405c/- |
| Rv0493c/- | (cc=0.5137) | info on Rv0493c/- |
| Rv1174c/TB8.4 | (cc=0.5096) | info on Rv1174c/TB8.4 |
| Rv1235/lpqY | (cc=0.5009) | info on Rv1235/lpqY |
| Rv3873/PPE68 | (cc=0.4991) | info on Rv3873/PPE68 |
| Rv1589/bioB | (cc=0.4966) | info on Rv1589/bioB |
Correlation of Rv0401/- with Rv3197/-
Normalized LFCs for Rv0401/-:
(description and provenance of datasets)
| Rv0401/- | Rv3197/- | |
| Fe_supp_jason_reseq | -1.92 | 0.865 |
| low_pH_jason_reseq | -0.704 | -1.295 |
| NO_jason_reseq | 0.095 | 0.407 |
| B6_jason_reseq | -1.303 | -1.729 |
| MHCII_jason_reseq | 0.275 | -1.339 |
| Isoniazid02 | 0.435 | 1.461 |
| Rifampicin4 | -0.477 | -1.424 |
| Ethambutol3 | -0.406 | 0.062 |
| Meropenem3 | -0.167 | 1.488 |
| Vancomycin16 | 0.172 | -0.759 |
| Rv2680_day32 | -3.878 | -1.588 |
| H37Rv_KO_MarP | 1.445 | 0.938 |
| hypoxia_3wks | 0.399 | -0.754 |
| hypoxia_6wks | 0.998 | -0.883 |
| glycerol | -0.29 | -0.784 |
| cholesterol | -0.238 | -0.354 |
| AJ | -1.966 | -1.992 |
| Bibs02 | 1.42 | -0.815 |
| Bibs02c | -0.55 | -2.495 |
| BL6 | -0.497 | -1.298 |
| BL6a | -1.124 | -2.303 |
| BXD01 | -3.1 | -2.047 |
| BXD010 | -2.582 | -1.567 |
| BXD011 | -2.287 | -1.241 |
| BXD03 | -1.289 | -1.302 |
| BXD04 | -2.84 | -1.917 |
| BXD05 | -1.253 | -1.976 |
| BXD06 | -0.621 | -2.157 |
| BXD07 | -2.792 | -2.006 |
| BXD08 | -2.951 | -1.852 |
| BXD09 | -0.541 | -1.931 |
| CAST | -1.73 | -2.054 |
| CCcont | -1.755 | -0.78 |
| DS01 | -2.099 | -2.483 |
| DS02 | -1.757 | -1.336 |
| DS04 | -1.893 | -1.753 |
| DS0c | -3.894 | -1.614 |
| GP01 | -1.476 | 0.024 |
| GP02 | -1.127 | -0.025 |
| GP0c | -1.458 | -0.776 |
| NOD | -2.639 | -0.952 |
| NZO | -3.218 | -2.319 |
| PWK | -1.142 | -1.684 |
| H37Rv_KO_CtpC | -3.085 | -0.773 |
| H37Rv_KO_CtpD | 0.54 | 0.23 |
| H37Rv_KO_Rv1272 | -1.167 | -1.34 |
| H37Rv_KO_SugABC | -2.448 | -0.248 |
| H37Rv_KO_MbtN | -1.85 | -1.168 |
| Trans05 | -2.108 | -1.39 |
| macrophage_unactivated | 3.156 | 0.672 |
| IL1 | 0.151 | 0.389 |
| Rapamycin | -0.16 | 0.338 |
| Tcell | 0.772 | 0.756 |
| GMCSF | 0.958 | 0.665 |
| IFNab | 1.971 | -0.36 |
| IFNg | 3.065 | 0.433 |
| IFNg_GMCSF1 | 2.536 | 0.606 |
| Rv1432_day32 | -1.618 | -1.119 |
| Rv1565c_day32 | 0.0 | -1.091 |
| secA2_input | 2.951 | 0.899 |
| delta_Rv3594 | -2.177 | -0.098 |
| delta_Rv3717 | -1.419 | -1.888 |
| delta_Rv3811 | -0.399 | -0.617 |
| delta_Rv0954 | -0.947 | 0.69 |
| PonA1 | 0.11 | 1.238 |
| EccD1_KO | -1.378 | 0.201 |
| EspI_KO | -2.818 | 0.479 |
| PE35_KO | -3.325 | 0.128 |
| PPE68_KO | -2.582 | 0.166 |
| glycerol2 | 0.0 | -0.254 |
| lignocerate | 0.0 | 0.335 |
| oleate | 0.0 | -0.176 |
| phosphatidylcholine | 0.368 | 0.634 |
| acetate | 0.0 | -0.246 |
| glucAc | 1.034 | -0.145 |
| Rv0950ko | 1.095 | 1.173 |
| Rv1096ko | 2.548 | 0.953 |
| Rv3684ko | 0.0 | 0.36 |
| delta_otsA_trehalose | 0.0 | 0.446 |