Top 10 genes with highest correlation to Rv3906c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2059/- | (cc=0.5571) | info on Rv2059/- |
| Rv1697/- | (cc=0.5534) | info on Rv1697/- |
| Rv2712c/- | (cc=0.5133) | info on Rv2712c/- |
| Rv0325/- | (cc=0.4769) | info on Rv0325/- |
| Rv1688/mpg | (cc=0.4757) | info on Rv1688/mpg |
| Rv2332/mez | (cc=0.4704) | info on Rv2332/mez |
| Rv2333c/stp | (cc=0.4659) | info on Rv2333c/stp |
| Rv2681/- | (cc=0.4562) | info on Rv2681/- |
| Rv3136A/- | (cc=0.453) | info on Rv3136A/- |
| Rv0532/PE_PGRS6 | (cc=0.4519) | info on Rv0532/PE_PGRS6 |
Correlation of Rv3906c/- with Rv3136A/-
Normalized LFCs for Rv3906c/-:
(description and provenance of datasets)
| Rv3906c/- | Rv3136A/- | |
| Fe_supp_jason_reseq | -0.448 | 1.127 |
| low_pH_jason_reseq | 0.478 | -0.478 |
| NO_jason_reseq | 0.814 | 0.179 |
| B6_jason_reseq | -0.396 | 0.81 |
| MHCII_jason_reseq | -0.074 | 0.619 |
| Isoniazid02 | 4.598 | 2.03 |
| Rifampicin4 | 1.004 | 0.0 |
| Ethambutol3 | 1.086 | 2.81 |
| Meropenem3 | 0.138 | 2.511 |
| Vancomycin16 | 0.409 | -0.692 |
| Rv2680_day32 | -0.563 | 0.279 |
| H37Rv_KO_MarP | 0.542 | 1.388 |
| hypoxia_3wks | 0.068 | 0.231 |
| hypoxia_6wks | 0.677 | -0.898 |
| glycerol | -0.468 | -2.093 |
| cholesterol | -0.711 | -1.879 |
| AJ | -0.198 | -1.138 |
| Bibs02 | -0.658 | -0.8 |
| Bibs02c | -0.711 | -0.72 |
| BL6 | -0.684 | -1.346 |
| BL6a | -1.745 | -1.179 |
| BXD01 | -0.66 | -1.104 |
| BXD010 | -1.201 | -1.484 |
| BXD011 | -1.039 | -1.203 |
| BXD03 | -1.191 | -1.241 |
| BXD04 | 0.675 | -0.514 |
| BXD05 | -0.336 | -1.319 |
| BXD06 | -0.527 | -1.018 |
| BXD07 | -0.702 | -1.37 |
| BXD08 | -0.443 | -1.227 |
| BXD09 | -0.913 | -1.377 |
| CAST | 0.152 | -0.45 |
| CCcont | -0.768 | -1.683 |
| DS01 | 0.477 | -1.489 |
| DS02 | 0.359 | -0.975 |
| DS04 | 0.765 | -0.696 |
| DS0c | -0.085 | -1.326 |
| GP01 | -0.774 | -0.861 |
| GP02 | -0.098 | 0.397 |
| GP0c | -0.442 | -2.4 |
| NOD | 0.334 | -0.07 |
| NZO | 0.65 | -0.548 |
| PWK | 1.114 | -0.594 |
| H37Rv_KO_CtpC | -0.131 | -0.46 |
| H37Rv_KO_CtpD | 0.054 | -0.966 |
| H37Rv_KO_Rv1272 | -0.379 | -1.468 |
| H37Rv_KO_SugABC | 0.291 | -0.222 |
| H37Rv_KO_MbtN | 0.361 | -1.743 |
| Trans05 | -0.652 | -0.575 |
| macrophage_unactivated | -0.562 | -1.092 |
| IL1 | -0.323 | -1.071 |
| Rapamycin | 1.224 | -1.608 |
| Tcell | -0.938 | -0.678 |
| GMCSF | -0.565 | -0.782 |
| IFNab | -0.502 | -2.279 |
| IFNg | 0.027 | -1.208 |
| IFNg_GMCSF1 | 0.223 | -0.93 |
| Rv1432_day32 | -0.145 | 0.819 |
| Rv1565c_day32 | 0.54 | -0.333 |
| secA2_input | -0.49 | 0.161 |
| delta_Rv3594 | -1.423 | -0.344 |
| delta_Rv3717 | -0.774 | -1.354 |
| delta_Rv3811 | -0.757 | -0.413 |
| delta_Rv0954 | -0.942 | -0.16 |
| PonA1 | 0.811 | 0.132 |
| EccD1_KO | 0.23 | 0.151 |
| EspI_KO | 0.0 | -0.416 |
| PE35_KO | 0.379 | 0.925 |
| PPE68_KO | 0.09 | 0.771 |
| glycerol2 | 0.82 | 0.186 |
| lignocerate | 0.324 | -0.486 |
| oleate | 0.441 | 0.319 |
| phosphatidylcholine | 0.099 | -0.02 |
| acetate | 1.032 | 0.047 |
| glucAc | -0.191 | 0.104 |
| Rv0950ko | -0.286 | -0.422 |
| Rv1096ko | -0.648 | -0.648 |
| Rv3684ko | 0.0 | -1.215 |
| delta_otsA_trehalose | -0.071 | -0.196 |