Top 10 genes with highest correlation to Rv3906c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2059/- | (cc=0.5571) | info on Rv2059/- |
| Rv1697/- | (cc=0.5534) | info on Rv1697/- |
| Rv2712c/- | (cc=0.5133) | info on Rv2712c/- |
| Rv0325/- | (cc=0.4769) | info on Rv0325/- |
| Rv1688/mpg | (cc=0.4757) | info on Rv1688/mpg |
| Rv2332/mez | (cc=0.4704) | info on Rv2332/mez |
| Rv2333c/stp | (cc=0.4659) | info on Rv2333c/stp |
| Rv2681/- | (cc=0.4562) | info on Rv2681/- |
| Rv3136A/- | (cc=0.453) | info on Rv3136A/- |
| Rv0532/PE_PGRS6 | (cc=0.4519) | info on Rv0532/PE_PGRS6 |
Correlation of Rv3906c/- with Rv2681/-
Normalized LFCs for Rv3906c/-:
(description and provenance of datasets)
| Rv3906c/- | Rv2681/- | |
| Fe_supp_jason_reseq | -0.448 | 1.628 |
| low_pH_jason_reseq | 0.478 | 0.102 |
| NO_jason_reseq | 0.814 | -1.494 |
| B6_jason_reseq | -0.396 | -1.794 |
| MHCII_jason_reseq | -0.074 | 0.06 |
| Isoniazid02 | 4.598 | 1.116 |
| Rifampicin4 | 1.004 | 0.0 |
| Ethambutol3 | 1.086 | -0.528 |
| Meropenem3 | 0.138 | 0.074 |
| Vancomycin16 | 0.409 | -1.804 |
| Rv2680_day32 | -0.563 | -0.971 |
| H37Rv_KO_MarP | 0.542 | 1.769 |
| hypoxia_3wks | 0.068 | -0.969 |
| hypoxia_6wks | 0.677 | -1.355 |
| glycerol | -0.468 | 1.17 |
| cholesterol | -0.711 | -0.141 |
| AJ | -0.198 | -0.901 |
| Bibs02 | -0.658 | -0.624 |
| Bibs02c | -0.711 | -0.873 |
| BL6 | -0.684 | -2.702 |
| BL6a | -1.745 | -1.543 |
| BXD01 | -0.66 | -3.117 |
| BXD010 | -1.201 | -3.065 |
| BXD011 | -1.039 | -2.752 |
| BXD03 | -1.191 | -2.921 |
| BXD04 | 0.675 | -2.49 |
| BXD05 | -0.336 | -2.979 |
| BXD06 | -0.527 | -3.285 |
| BXD07 | -0.702 | -3.407 |
| BXD08 | -0.443 | -3.273 |
| BXD09 | -0.913 | -3.274 |
| CAST | 0.152 | -0.125 |
| CCcont | -0.768 | -1.248 |
| DS01 | 0.477 | 0.713 |
| DS02 | 0.359 | 1.419 |
| DS04 | 0.765 | 0.914 |
| DS0c | -0.085 | 0.369 |
| GP01 | -0.774 | -2.66 |
| GP02 | -0.098 | -2.4 |
| GP0c | -0.442 | -3.503 |
| NOD | 0.334 | -0.029 |
| NZO | 0.65 | -1.342 |
| PWK | 1.114 | 0.473 |
| H37Rv_KO_CtpC | -0.131 | -1.589 |
| H37Rv_KO_CtpD | 0.054 | -0.579 |
| H37Rv_KO_Rv1272 | -0.379 | -2.354 |
| H37Rv_KO_SugABC | 0.291 | -1.995 |
| H37Rv_KO_MbtN | 0.361 | -2.226 |
| Trans05 | -0.652 | -2.413 |
| macrophage_unactivated | -0.562 | -2.702 |
| IL1 | -0.323 | -3.197 |
| Rapamycin | 1.224 | -2.627 |
| Tcell | -0.938 | -2.789 |
| GMCSF | -0.565 | -3.063 |
| IFNab | -0.502 | -3.773 |
| IFNg | 0.027 | -3.1 |
| IFNg_GMCSF1 | 0.223 | -2.275 |
| Rv1432_day32 | -0.145 | -2.117 |
| Rv1565c_day32 | 0.54 | 0.625 |
| secA2_input | -0.49 | 0.518 |
| delta_Rv3594 | -1.423 | -2.518 |
| delta_Rv3717 | -0.774 | -3.253 |
| delta_Rv3811 | -0.757 | -2.858 |
| delta_Rv0954 | -0.942 | -0.079 |
| PonA1 | 0.811 | 0.705 |
| EccD1_KO | 0.23 | -0.066 |
| EspI_KO | 0.0 | 0.217 |
| PE35_KO | 0.379 | 0.432 |
| PPE68_KO | 0.09 | -0.39 |
| glycerol2 | 0.82 | 0.863 |
| lignocerate | 0.324 | -0.242 |
| oleate | 0.441 | -0.846 |
| phosphatidylcholine | 0.099 | 0.731 |
| acetate | 1.032 | 0.15 |
| glucAc | -0.191 | 1.115 |
| Rv0950ko | -0.286 | -0.482 |
| Rv1096ko | -0.648 | -0.57 |
| Rv3684ko | 0.0 | -0.91 |
| delta_otsA_trehalose | -0.071 | 1.041 |