Top 10 genes with highest correlation to Rv3906c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2059/- | (cc=0.5571) | info on Rv2059/- |
| Rv1697/- | (cc=0.5534) | info on Rv1697/- |
| Rv2712c/- | (cc=0.5133) | info on Rv2712c/- |
| Rv0325/- | (cc=0.4769) | info on Rv0325/- |
| Rv1688/mpg | (cc=0.4757) | info on Rv1688/mpg |
| Rv2332/mez | (cc=0.4704) | info on Rv2332/mez |
| Rv2333c/stp | (cc=0.4659) | info on Rv2333c/stp |
| Rv2681/- | (cc=0.4562) | info on Rv2681/- |
| Rv3136A/- | (cc=0.453) | info on Rv3136A/- |
| Rv0532/PE_PGRS6 | (cc=0.4519) | info on Rv0532/PE_PGRS6 |
Correlation of Rv3906c/- with Rv2332/mez
Normalized LFCs for Rv3906c/-:
(description and provenance of datasets)
| Rv3906c/- | Rv2332/mez | |
| Fe_supp_jason_reseq | -0.448 | 0.751 |
| low_pH_jason_reseq | 0.478 | -0.437 |
| NO_jason_reseq | 0.814 | -0.076 |
| B6_jason_reseq | -0.396 | 0.227 |
| MHCII_jason_reseq | -0.074 | 0.472 |
| Isoniazid02 | 4.598 | 1.672 |
| Rifampicin4 | 1.004 | 0.181 |
| Ethambutol3 | 1.086 | 0.955 |
| Meropenem3 | 0.138 | 0.319 |
| Vancomycin16 | 0.409 | 0.424 |
| Rv2680_day32 | -0.563 | 0.305 |
| H37Rv_KO_MarP | 0.542 | 0.356 |
| hypoxia_3wks | 0.068 | 0.363 |
| hypoxia_6wks | 0.677 | 0.0 |
| glycerol | -0.468 | -0.806 |
| cholesterol | -0.711 | -0.336 |
| AJ | -0.198 | 0.534 |
| Bibs02 | -0.658 | 0.246 |
| Bibs02c | -0.711 | 0.091 |
| BL6 | -0.684 | -0.165 |
| BL6a | -1.745 | -0.06 |
| BXD01 | -0.66 | -0.059 |
| BXD010 | -1.201 | -0.243 |
| BXD011 | -1.039 | 0.103 |
| BXD03 | -1.191 | -0.4 |
| BXD04 | 0.675 | 0.25 |
| BXD05 | -0.336 | -0.103 |
| BXD06 | -0.527 | -0.041 |
| BXD07 | -0.702 | 0.08 |
| BXD08 | -0.443 | -0.276 |
| BXD09 | -0.913 | 0.225 |
| CAST | 0.152 | 0.557 |
| CCcont | -0.768 | -0.365 |
| DS01 | 0.477 | 0.046 |
| DS02 | 0.359 | -0.099 |
| DS04 | 0.765 | 0.423 |
| DS0c | -0.085 | -0.179 |
| GP01 | -0.774 | -0.279 |
| GP02 | -0.098 | -0.658 |
| GP0c | -0.442 | -1.335 |
| NOD | 0.334 | 0.747 |
| NZO | 0.65 | 0.552 |
| PWK | 1.114 | 0.364 |
| H37Rv_KO_CtpC | -0.131 | -0.16 |
| H37Rv_KO_CtpD | 0.054 | 0.103 |
| H37Rv_KO_Rv1272 | -0.379 | 0.208 |
| H37Rv_KO_SugABC | 0.291 | 0.444 |
| H37Rv_KO_MbtN | 0.361 | 0.074 |
| Trans05 | -0.652 | 0.874 |
| macrophage_unactivated | -0.562 | -0.3 |
| IL1 | -0.323 | -0.362 |
| Rapamycin | 1.224 | -0.752 |
| Tcell | -0.938 | -0.609 |
| GMCSF | -0.565 | -0.752 |
| IFNab | -0.502 | -0.396 |
| IFNg | 0.027 | -1.101 |
| IFNg_GMCSF1 | 0.223 | -0.927 |
| Rv1432_day32 | -0.145 | 0.81 |
| Rv1565c_day32 | 0.54 | 0.376 |
| secA2_input | -0.49 | -0.794 |
| delta_Rv3594 | -1.423 | -0.257 |
| delta_Rv3717 | -0.774 | -0.614 |
| delta_Rv3811 | -0.757 | -0.228 |
| delta_Rv0954 | -0.942 | -0.497 |
| PonA1 | 0.811 | 0.433 |
| EccD1_KO | 0.23 | 0.464 |
| EspI_KO | 0.0 | 0.707 |
| PE35_KO | 0.379 | 0.368 |
| PPE68_KO | 0.09 | 0.477 |
| glycerol2 | 0.82 | 0.67 |
| lignocerate | 0.324 | 0.664 |
| oleate | 0.441 | 0.543 |
| phosphatidylcholine | 0.099 | 0.647 |
| acetate | 1.032 | 0.221 |
| glucAc | -0.191 | 0.187 |
| Rv0950ko | -0.286 | -0.555 |
| Rv1096ko | -0.648 | -0.79 |
| Rv3684ko | 0.0 | -1.294 |
| delta_otsA_trehalose | -0.071 | -0.092 |