Top 10 genes with highest correlation to Rv3906c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2059/- | (cc=0.5571) | info on Rv2059/- |
| Rv1697/- | (cc=0.5534) | info on Rv1697/- |
| Rv2712c/- | (cc=0.5133) | info on Rv2712c/- |
| Rv0325/- | (cc=0.4769) | info on Rv0325/- |
| Rv1688/mpg | (cc=0.4757) | info on Rv1688/mpg |
| Rv2332/mez | (cc=0.4704) | info on Rv2332/mez |
| Rv2333c/stp | (cc=0.4659) | info on Rv2333c/stp |
| Rv2681/- | (cc=0.4562) | info on Rv2681/- |
| Rv3136A/- | (cc=0.453) | info on Rv3136A/- |
| Rv0532/PE_PGRS6 | (cc=0.4519) | info on Rv0532/PE_PGRS6 |
Correlation of Rv3906c/- with Rv2333c/stp
Normalized LFCs for Rv3906c/-:
(description and provenance of datasets)
| Rv3906c/- | Rv2333c/stp | |
| Fe_supp_jason_reseq | -0.448 | 0.278 |
| low_pH_jason_reseq | 0.478 | -0.611 |
| NO_jason_reseq | 0.814 | -0.404 |
| B6_jason_reseq | -0.396 | 0.446 |
| MHCII_jason_reseq | -0.074 | 0.189 |
| Isoniazid02 | 4.598 | 2.51 |
| Rifampicin4 | 1.004 | 0.249 |
| Ethambutol3 | 1.086 | 1.744 |
| Meropenem3 | 0.138 | 0.189 |
| Vancomycin16 | 0.409 | 0.488 |
| Rv2680_day32 | -0.563 | -0.032 |
| H37Rv_KO_MarP | 0.542 | 0.425 |
| hypoxia_3wks | 0.068 | -0.211 |
| hypoxia_6wks | 0.677 | -0.163 |
| glycerol | -0.468 | -0.247 |
| cholesterol | -0.711 | -0.494 |
| AJ | -0.198 | 0.491 |
| Bibs02 | -0.658 | -0.125 |
| Bibs02c | -0.711 | 0.089 |
| BL6 | -0.684 | -0.171 |
| BL6a | -1.745 | -0.063 |
| BXD01 | -0.66 | -0.11 |
| BXD010 | -1.201 | 0.307 |
| BXD011 | -1.039 | 0.096 |
| BXD03 | -1.191 | 0.193 |
| BXD04 | 0.675 | 0.1 |
| BXD05 | -0.336 | 0.401 |
| BXD06 | -0.527 | 0.104 |
| BXD07 | -0.702 | 0.0 |
| BXD08 | -0.443 | 0.226 |
| BXD09 | -0.913 | 0.29 |
| CAST | 0.152 | 0.506 |
| CCcont | -0.768 | 0.037 |
| DS01 | 0.477 | 0.044 |
| DS02 | 0.359 | 0.126 |
| DS04 | 0.765 | -0.218 |
| DS0c | -0.085 | 0.189 |
| GP01 | -0.774 | -0.084 |
| GP02 | -0.098 | 0.146 |
| GP0c | -0.442 | 0.214 |
| NOD | 0.334 | 0.169 |
| NZO | 0.65 | 0.442 |
| PWK | 1.114 | 0.46 |
| H37Rv_KO_CtpC | -0.131 | 0.425 |
| H37Rv_KO_CtpD | 0.054 | 0.178 |
| H37Rv_KO_Rv1272 | -0.379 | -0.281 |
| H37Rv_KO_SugABC | 0.291 | -0.259 |
| H37Rv_KO_MbtN | 0.361 | -0.003 |
| Trans05 | -0.652 | -0.045 |
| macrophage_unactivated | -0.562 | -0.211 |
| IL1 | -0.323 | 0.205 |
| Rapamycin | 1.224 | 0.0 |
| Tcell | -0.938 | -0.27 |
| GMCSF | -0.565 | 0.428 |
| IFNab | -0.502 | 0.351 |
| IFNg | 0.027 | 0.299 |
| IFNg_GMCSF1 | 0.223 | -0.016 |
| Rv1432_day32 | -0.145 | 0.053 |
| Rv1565c_day32 | 0.54 | 0.866 |
| secA2_input | -0.49 | -0.686 |
| delta_Rv3594 | -1.423 | 0.471 |
| delta_Rv3717 | -0.774 | -0.201 |
| delta_Rv3811 | -0.757 | 0.11 |
| delta_Rv0954 | -0.942 | 0.538 |
| PonA1 | 0.811 | 0.355 |
| EccD1_KO | 0.23 | 0.227 |
| EspI_KO | 0.0 | 0.442 |
| PE35_KO | 0.379 | 0.0 |
| PPE68_KO | 0.09 | 0.138 |
| glycerol2 | 0.82 | -0.128 |
| lignocerate | 0.324 | 0.255 |
| oleate | 0.441 | -0.325 |
| phosphatidylcholine | 0.099 | -0.083 |
| acetate | 1.032 | -0.231 |
| glucAc | -0.191 | 0.244 |
| Rv0950ko | -0.286 | 0.296 |
| Rv1096ko | -0.648 | -0.178 |
| Rv3684ko | 0.0 | -0.462 |
| delta_otsA_trehalose | -0.071 | -0.557 |