Top 10 genes with highest correlation to Rv3906c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2059/- | (cc=0.5571) | info on Rv2059/- |
| Rv1697/- | (cc=0.5534) | info on Rv1697/- |
| Rv2712c/- | (cc=0.5133) | info on Rv2712c/- |
| Rv0325/- | (cc=0.4769) | info on Rv0325/- |
| Rv1688/mpg | (cc=0.4757) | info on Rv1688/mpg |
| Rv2332/mez | (cc=0.4704) | info on Rv2332/mez |
| Rv2333c/stp | (cc=0.4659) | info on Rv2333c/stp |
| Rv2681/- | (cc=0.4562) | info on Rv2681/- |
| Rv3136A/- | (cc=0.453) | info on Rv3136A/- |
| Rv0532/PE_PGRS6 | (cc=0.4519) | info on Rv0532/PE_PGRS6 |
Correlation of Rv3906c/- with Rv0325/-
Normalized LFCs for Rv3906c/-:
(description and provenance of datasets)
| Rv3906c/- | Rv0325/- | |
| Fe_supp_jason_reseq | -0.448 | -0.933 |
| low_pH_jason_reseq | 0.478 | -0.1 |
| NO_jason_reseq | 0.814 | 0.459 |
| B6_jason_reseq | -0.396 | 0.812 |
| MHCII_jason_reseq | -0.074 | 0.663 |
| Isoniazid02 | 4.598 | 2.146 |
| Rifampicin4 | 1.004 | 0.0 |
| Ethambutol3 | 1.086 | 1.867 |
| Meropenem3 | 0.138 | 0.734 |
| Vancomycin16 | 0.409 | 0.196 |
| Rv2680_day32 | -0.563 | 0.179 |
| H37Rv_KO_MarP | 0.542 | 0.226 |
| hypoxia_3wks | 0.068 | 0.742 |
| hypoxia_6wks | 0.677 | 0.286 |
| glycerol | -0.468 | 0.048 |
| cholesterol | -0.711 | 0.406 |
| AJ | -0.198 | -0.04 |
| Bibs02 | -0.658 | 0.155 |
| Bibs02c | -0.711 | -0.755 |
| BL6 | -0.684 | -1.539 |
| BL6a | -1.745 | -0.966 |
| BXD01 | -0.66 | -0.567 |
| BXD010 | -1.201 | -1.32 |
| BXD011 | -1.039 | -0.328 |
| BXD03 | -1.191 | -1.245 |
| BXD04 | 0.675 | -1.3 |
| BXD05 | -0.336 | -1.341 |
| BXD06 | -0.527 | -0.854 |
| BXD07 | -0.702 | -1.477 |
| BXD08 | -0.443 | -0.473 |
| BXD09 | -0.913 | -1.507 |
| CAST | 0.152 | 0.138 |
| CCcont | -0.768 | -1.472 |
| DS01 | 0.477 | -0.151 |
| DS02 | 0.359 | -0.997 |
| DS04 | 0.765 | -0.471 |
| DS0c | -0.085 | 0.273 |
| GP01 | -0.774 | -1.378 |
| GP02 | -0.098 | -0.636 |
| GP0c | -0.442 | -0.421 |
| NOD | 0.334 | -0.099 |
| NZO | 0.65 | 0.156 |
| PWK | 1.114 | -0.004 |
| H37Rv_KO_CtpC | -0.131 | -0.961 |
| H37Rv_KO_CtpD | 0.054 | -0.729 |
| H37Rv_KO_Rv1272 | -0.379 | -1.118 |
| H37Rv_KO_SugABC | 0.291 | -0.529 |
| H37Rv_KO_MbtN | 0.361 | -0.872 |
| Trans05 | -0.652 | -0.003 |
| macrophage_unactivated | -0.562 | -0.735 |
| IL1 | -0.323 | -0.32 |
| Rapamycin | 1.224 | -0.694 |
| Tcell | -0.938 | 0.209 |
| GMCSF | -0.565 | 0.298 |
| IFNab | -0.502 | -0.263 |
| IFNg | 0.027 | -0.069 |
| IFNg_GMCSF1 | 0.223 | 0.16 |
| Rv1432_day32 | -0.145 | -0.11 |
| Rv1565c_day32 | 0.54 | 0.306 |
| secA2_input | -0.49 | -0.47 |
| delta_Rv3594 | -1.423 | -0.236 |
| delta_Rv3717 | -0.774 | 0.121 |
| delta_Rv3811 | -0.757 | 0.126 |
| delta_Rv0954 | -0.942 | 1.239 |
| PonA1 | 0.811 | 0.807 |
| EccD1_KO | 0.23 | -0.25 |
| EspI_KO | 0.0 | 0.117 |
| PE35_KO | 0.379 | -0.263 |
| PPE68_KO | 0.09 | -0.729 |
| glycerol2 | 0.82 | 0.678 |
| lignocerate | 0.324 | 0.183 |
| oleate | 0.441 | 0.872 |
| phosphatidylcholine | 0.099 | 0.657 |
| acetate | 1.032 | -0.374 |
| glucAc | -0.191 | -0.387 |
| Rv0950ko | -0.286 | 0.467 |
| Rv1096ko | -0.648 | -0.341 |
| Rv3684ko | 0.0 | -1.1 |
| delta_otsA_trehalose | -0.071 | -0.601 |