Top 10 genes with highest correlation to Rv3906c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2059/- | (cc=0.5571) | info on Rv2059/- |
| Rv1697/- | (cc=0.5534) | info on Rv1697/- |
| Rv2712c/- | (cc=0.5133) | info on Rv2712c/- |
| Rv0325/- | (cc=0.4769) | info on Rv0325/- |
| Rv1688/mpg | (cc=0.4757) | info on Rv1688/mpg |
| Rv2332/mez | (cc=0.4704) | info on Rv2332/mez |
| Rv2333c/stp | (cc=0.4659) | info on Rv2333c/stp |
| Rv2681/- | (cc=0.4562) | info on Rv2681/- |
| Rv3136A/- | (cc=0.453) | info on Rv3136A/- |
| Rv0532/PE_PGRS6 | (cc=0.4519) | info on Rv0532/PE_PGRS6 |
Correlation of Rv3906c/- with Rv1688/mpg
Normalized LFCs for Rv3906c/-:
(description and provenance of datasets)
| Rv3906c/- | Rv1688/mpg | |
| Fe_supp_jason_reseq | -0.448 | 0.268 |
| low_pH_jason_reseq | 0.478 | -0.38 |
| NO_jason_reseq | 0.814 | 0.824 |
| B6_jason_reseq | -0.396 | -0.417 |
| MHCII_jason_reseq | -0.074 | 0.891 |
| Isoniazid02 | 4.598 | 2.306 |
| Rifampicin4 | 1.004 | 1.497 |
| Ethambutol3 | 1.086 | 1.71 |
| Meropenem3 | 0.138 | 0.662 |
| Vancomycin16 | 0.409 | 1.151 |
| Rv2680_day32 | -0.563 | -0.108 |
| H37Rv_KO_MarP | 0.542 | 0.975 |
| hypoxia_3wks | 0.068 | 0.694 |
| hypoxia_6wks | 0.677 | 0.29 |
| glycerol | -0.468 | 0.771 |
| cholesterol | -0.711 | -0.055 |
| AJ | -0.198 | 0.419 |
| Bibs02 | -0.658 | 0.011 |
| Bibs02c | -0.711 | -0.62 |
| BL6 | -0.684 | -1.16 |
| BL6a | -1.745 | -1.56 |
| BXD01 | -0.66 | -1.418 |
| BXD010 | -1.201 | -2.414 |
| BXD011 | -1.039 | -1.055 |
| BXD03 | -1.191 | -1.403 |
| BXD04 | 0.675 | -1.531 |
| BXD05 | -0.336 | -0.167 |
| BXD06 | -0.527 | -1.341 |
| BXD07 | -0.702 | -0.711 |
| BXD08 | -0.443 | -0.779 |
| BXD09 | -0.913 | -0.693 |
| CAST | 0.152 | -0.399 |
| CCcont | -0.768 | -1.138 |
| DS01 | 0.477 | 0.014 |
| DS02 | 0.359 | -0.331 |
| DS04 | 0.765 | 1.172 |
| DS0c | -0.085 | -0.966 |
| GP01 | -0.774 | -1.184 |
| GP02 | -0.098 | -0.207 |
| GP0c | -0.442 | -0.555 |
| NOD | 0.334 | -1.087 |
| NZO | 0.65 | 0.49 |
| PWK | 1.114 | -0.163 |
| H37Rv_KO_CtpC | -0.131 | -1.556 |
| H37Rv_KO_CtpD | 0.054 | -0.529 |
| H37Rv_KO_Rv1272 | -0.379 | -1.535 |
| H37Rv_KO_SugABC | 0.291 | -2.165 |
| H37Rv_KO_MbtN | 0.361 | 0.678 |
| Trans05 | -0.652 | -1.445 |
| macrophage_unactivated | -0.562 | -0.95 |
| IL1 | -0.323 | 0.142 |
| Rapamycin | 1.224 | -0.396 |
| Tcell | -0.938 | 0.156 |
| GMCSF | -0.565 | -0.795 |
| IFNab | -0.502 | -0.076 |
| IFNg | 0.027 | -2.037 |
| IFNg_GMCSF1 | 0.223 | -0.079 |
| Rv1432_day32 | -0.145 | 1.197 |
| Rv1565c_day32 | 0.54 | 0.949 |
| secA2_input | -0.49 | -0.729 |
| delta_Rv3594 | -1.423 | 0.552 |
| delta_Rv3717 | -0.774 | 0.652 |
| delta_Rv3811 | -0.757 | -0.451 |
| delta_Rv0954 | -0.942 | 0.372 |
| PonA1 | 0.811 | 0.085 |
| EccD1_KO | 0.23 | 0.201 |
| EspI_KO | 0.0 | 0.208 |
| PE35_KO | 0.379 | 0.248 |
| PPE68_KO | 0.09 | 0.525 |
| glycerol2 | 0.82 | -0.556 |
| lignocerate | 0.324 | -0.537 |
| oleate | 0.441 | 0.301 |
| phosphatidylcholine | 0.099 | 0.244 |
| acetate | 1.032 | -0.308 |
| glucAc | -0.191 | 1.266 |
| Rv0950ko | -0.286 | -0.808 |
| Rv1096ko | -0.648 | 0.434 |
| Rv3684ko | 0.0 | 1.113 |
| delta_otsA_trehalose | -0.071 | -1.13 |