TnSeqCorr

Top 10 genes with highest correlation to Rv3774/echA21:

update plotcorrelationlink to info on gene
Rv0632c/echA3 (cc=0.5198) info on Rv0632c/echA3
Rv3263/- (cc=0.4944) info on Rv3263/-
Rv1169c/lipX (cc=0.4675) info on Rv1169c/lipX
Rv1210/tagA (cc=0.4262) info on Rv1210/tagA
Rv0516c/- (cc=0.4157) info on Rv0516c/-
Rv0259c/- (cc=0.4108) info on Rv0259c/-
Rv3696c/glpK (cc=0.4028) info on Rv3696c/glpK
Rv2815c/- (cc=0.4022) info on Rv2815c/-
Rv0115/hddA (cc=0.3873) info on Rv0115/hddA
Rv0794c/- (cc=0.3801) info on Rv0794c/-

Correlation of Rv3774/echA21 with Rv3263/-

Normalized LFCs for Rv3774/echA21:
(description and provenance of datasets)
Rv3774/echA21Rv3263/-
Fe_supp_jason_reseq

-1.018

-1.905

low_pH_jason_reseq

0.296

-0.959

NO_jason_reseq

-0.357

0.837

B6_jason_reseq

1.084

0.922

MHCII_jason_reseq

-0.437

-0.43

Isoniazid02

-0.978

-0.489

Rifampicin4

-0.91

0.16

Ethambutol3

-0.225

0.758

Meropenem3

-1.249

0.109

Vancomycin16

-2.035

-0.695

Rv2680_day32

-0.597

-0.234

H37Rv_KO_MarP

0.189

-0.452

hypoxia_3wks

0.977

-0.247

hypoxia_6wks

2.687

0.578

glycerol

-0.554

-0.582

cholesterol

0.026

-0.775

AJ

0.247

-0.21

Bibs02

0.325

-0.609

Bibs02c

0.424

-0.332

BL6

-0.805

0.115

BL6a

-0.316

-0.258

BXD01

0.327

0.184

BXD010

0.482

0.337

BXD011

0.233

1.005

BXD03

-0.31

0.09

BXD04

1.386

0.789

BXD05

-0.349

0.495

BXD06

0.573

0.821

BXD07

-0.875

0.652

BXD08

-0.246

0.599

BXD09

-0.052

0.19

CAST

1.276

1.431

CCcont

-1.457

-1.225

DS01

-0.029

-0.944

DS02

0.301

-0.731

DS04

0.455

-0.682

DS0c

0.013

-1.051

GP01

-0.13

0.595

GP02

1.394

0.579

GP0c

0.197

0.048

NOD

-0.213

0.044

NZO

0.691

0.621

PWK

2.214

1.826

H37Rv_KO_CtpC

0.292

1.37

H37Rv_KO_CtpD

0.408

0.098

H37Rv_KO_Rv1272

-1.637

-0.939

H37Rv_KO_SugABC

0.734

0.037

H37Rv_KO_MbtN

-0.385

0.144

Trans05

1.04

0.422

macrophage_unactivated

-0.868

-1.591

IL1

0.489

0.027

Rapamycin

-0.491

-0.789

Tcell

0.815

0.469

GMCSF

-0.269

-0.325

IFNab

-1.932

-1.094

IFNg

-0.861

0.457

IFNg_GMCSF1

-0.864

0.39

Rv1432_day32

-0.456

1.272

Rv1565c_day32

-1.273

-1.303

secA2_input

0.596

0.507

delta_Rv3594

-0.526

0.381

delta_Rv3717

0.22

0.79

delta_Rv3811

-0.449

0.272

delta_Rv0954

-0.308

0.044

PonA1

-1.199

-0.117

EccD1_KO

-0.349

0.467

EspI_KO

-0.083

-0.057

PE35_KO

-0.592

0.222

PPE68_KO

-0.518

0.042

glycerol2

0.894

0.905

lignocerate

0.823

0.463

oleate

-1.971

-0.22

phosphatidylcholine

0.447

1.006

acetate

0.981

-0.12

glucAc

0.65

0.277

Rv0950ko

0.0

0.645

Rv1096ko

0.051

0.193

Rv3684ko

-0.2

0.901

delta_otsA_trehalose

-0.452

0.021