Top 10 genes with highest correlation to Rv3720/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3719/- | (cc=0.7865) | info on Rv3719/- |
| Rv1633/uvrB | (cc=0.6074) | info on Rv1633/uvrB |
| Rv3210c/- | (cc=0.6019) | info on Rv3210c/- |
| Rv3133c/devR | (cc=0.5936) | info on Rv3133c/devR |
| Rv2179c/- | (cc=0.5886) | info on Rv2179c/- |
| Rv0821c/phoY2 | (cc=0.5788) | info on Rv0821c/phoY2 |
| Rv3045/adhC | (cc=0.5746) | info on Rv3045/adhC |
| Rv1005c/pabB | (cc=0.5416) | info on Rv1005c/pabB |
| Rv3823c/mmpL8 | (cc=0.5369) | info on Rv3823c/mmpL8 |
| Rv3816c/- | (cc=0.5359) | info on Rv3816c/- |
Correlation of Rv3720/- with Rv3719/-
Normalized LFCs for Rv3720/-:
(description and provenance of datasets)
| Rv3720/- | Rv3719/- | |
| Fe_supp_jason_reseq | -0.497 | 0.281 |
| low_pH_jason_reseq | -0.054 | -1.031 |
| NO_jason_reseq | 0.916 | 2.714 |
| B6_jason_reseq | -1.154 | 0.779 |
| MHCII_jason_reseq | -1.901 | -0.513 |
| Isoniazid02 | -2.088 | 0.111 |
| Rifampicin4 | -2.578 | -2.97 |
| Ethambutol3 | -0.383 | 0.66 |
| Meropenem3 | -3.225 | -0.22 |
| Vancomycin16 | -1.86 | -1.045 |
| Rv2680_day32 | 0.081 | -0.239 |
| H37Rv_KO_MarP | -3.041 | -1.218 |
| hypoxia_3wks | -6.0 | -4.685 |
| hypoxia_6wks | -4.679 | -2.76 |
| glycerol | -2.794 | -1.596 |
| cholesterol | -0.648 | -0.598 |
| AJ | -1.988 | -0.923 |
| Bibs02 | -1.238 | 0.221 |
| Bibs02c | -1.0 | 0.13 |
| BL6 | 0.626 | 0.4 |
| BL6a | 0.606 | 1.538 |
| BXD01 | 0.506 | 1.149 |
| BXD010 | 0.708 | 1.367 |
| BXD011 | 1.247 | 2.597 |
| BXD03 | 0.603 | 0.935 |
| BXD04 | 0.847 | 1.859 |
| BXD05 | 1.122 | 1.535 |
| BXD06 | 1.077 | 1.736 |
| BXD07 | 0.949 | 1.765 |
| BXD08 | 0.338 | 1.498 |
| BXD09 | 0.498 | 1.531 |
| CAST | -0.542 | -0.879 |
| CCcont | 1.363 | 1.196 |
| DS01 | -1.557 | -0.471 |
| DS02 | 0.161 | 0.323 |
| DS04 | 0.779 | -0.569 |
| DS0c | -1.956 | -0.762 |
| GP01 | -0.372 | 1.224 |
| GP02 | -0.423 | 0.272 |
| GP0c | 0.073 | 1.206 |
| NOD | -1.287 | -0.789 |
| NZO | -0.893 | -0.824 |
| PWK | 0.198 | 0.398 |
| H37Rv_KO_CtpC | 1.319 | 0.052 |
| H37Rv_KO_CtpD | -0.062 | -0.252 |
| H37Rv_KO_Rv1272 | 0.723 | -0.015 |
| H37Rv_KO_SugABC | 0.222 | 0.301 |
| H37Rv_KO_MbtN | 1.704 | 0.321 |
| Trans05 | 0.498 | 0.974 |
| macrophage_unactivated | -0.107 | -0.357 |
| IL1 | -0.205 | 0.549 |
| Rapamycin | 0.236 | 0.675 |
| Tcell | 1.681 | -0.13 |
| GMCSF | -0.182 | -0.269 |
| IFNab | -0.07 | -0.245 |
| IFNg | -2.673 | -2.32 |
| IFNg_GMCSF1 | -1.304 | -1.2 |
| Rv1432_day32 | -2.155 | -1.248 |
| Rv1565c_day32 | -2.267 | -2.203 |
| secA2_input | 1.495 | 0.542 |
| delta_Rv3594 | -0.375 | -0.566 |
| delta_Rv3717 | 0.258 | 0.121 |
| delta_Rv3811 | -0.336 | -0.604 |
| delta_Rv0954 | -0.236 | -0.516 |
| PonA1 | -0.561 | -0.944 |
| EccD1_KO | -1.105 | -0.799 |
| EspI_KO | -0.89 | -0.761 |
| PE35_KO | -0.152 | -0.16 |
| PPE68_KO | -0.451 | -0.65 |
| glycerol2 | -0.338 | -0.083 |
| lignocerate | -0.462 | -0.307 |
| oleate | -0.537 | -1.337 |
| phosphatidylcholine | -0.531 | -0.779 |
| acetate | -0.401 | -0.199 |
| glucAc | -0.119 | 0.0 |
| Rv0950ko | 0.528 | 0.914 |
| Rv1096ko | 0.127 | 0.54 |
| Rv3684ko | 0.403 | 1.533 |
| delta_otsA_trehalose | 0.536 | 1.228 |