Top 10 genes with highest correlation to Rv3720/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3719/- | (cc=0.7865) | info on Rv3719/- |
| Rv1633/uvrB | (cc=0.6074) | info on Rv1633/uvrB |
| Rv3210c/- | (cc=0.6019) | info on Rv3210c/- |
| Rv3133c/devR | (cc=0.5936) | info on Rv3133c/devR |
| Rv2179c/- | (cc=0.5886) | info on Rv2179c/- |
| Rv0821c/phoY2 | (cc=0.5788) | info on Rv0821c/phoY2 |
| Rv3045/adhC | (cc=0.5746) | info on Rv3045/adhC |
| Rv1005c/pabB | (cc=0.5416) | info on Rv1005c/pabB |
| Rv3823c/mmpL8 | (cc=0.5369) | info on Rv3823c/mmpL8 |
| Rv3816c/- | (cc=0.5359) | info on Rv3816c/- |
Correlation of Rv3720/- with Rv0821c/phoY2
Normalized LFCs for Rv3720/-:
(description and provenance of datasets)
| Rv3720/- | Rv0821c/phoY2 | |
| Fe_supp_jason_reseq | -0.497 | -0.185 |
| low_pH_jason_reseq | -0.054 | 0.641 |
| NO_jason_reseq | 0.916 | -0.937 |
| B6_jason_reseq | -1.154 | 0.493 |
| MHCII_jason_reseq | -1.901 | -0.554 |
| Isoniazid02 | -2.088 | -2.653 |
| Rifampicin4 | -2.578 | -1.267 |
| Ethambutol3 | -0.383 | -1.018 |
| Meropenem3 | -3.225 | -0.412 |
| Vancomycin16 | -1.86 | -0.281 |
| Rv2680_day32 | 0.081 | 1.524 |
| H37Rv_KO_MarP | -3.041 | -1.04 |
| hypoxia_3wks | -6.0 | -6.0 |
| hypoxia_6wks | -4.679 | -5.003 |
| glycerol | -2.794 | -0.55 |
| cholesterol | -0.648 | 0.091 |
| AJ | -1.988 | -0.983 |
| Bibs02 | -1.238 | -0.658 |
| Bibs02c | -1.0 | 0.258 |
| BL6 | 0.626 | 1.192 |
| BL6a | 0.606 | 1.65 |
| BXD01 | 0.506 | 1.432 |
| BXD010 | 0.708 | 2.526 |
| BXD011 | 1.247 | 1.606 |
| BXD03 | 0.603 | 1.981 |
| BXD04 | 0.847 | 2.825 |
| BXD05 | 1.122 | 2.21 |
| BXD06 | 1.077 | 2.552 |
| BXD07 | 0.949 | 1.893 |
| BXD08 | 0.338 | 1.546 |
| BXD09 | 0.498 | 2.406 |
| CAST | -0.542 | 1.39 |
| CCcont | 1.363 | 1.214 |
| DS01 | -1.557 | -0.388 |
| DS02 | 0.161 | 0.808 |
| DS04 | 0.779 | 0.083 |
| DS0c | -1.956 | 0.823 |
| GP01 | -0.372 | 1.488 |
| GP02 | -0.423 | 1.192 |
| GP0c | 0.073 | 0.422 |
| NOD | -1.287 | -0.342 |
| NZO | -0.893 | -1.878 |
| PWK | 0.198 | -0.452 |
| H37Rv_KO_CtpC | 1.319 | 0.93 |
| H37Rv_KO_CtpD | -0.062 | -0.071 |
| H37Rv_KO_Rv1272 | 0.723 | 1.838 |
| H37Rv_KO_SugABC | 0.222 | 0.178 |
| H37Rv_KO_MbtN | 1.704 | -0.388 |
| Trans05 | 0.498 | 1.268 |
| macrophage_unactivated | -0.107 | -0.748 |
| IL1 | -0.205 | 0.264 |
| Rapamycin | 0.236 | -1.307 |
| Tcell | 1.681 | 0.248 |
| GMCSF | -0.182 | 1.861 |
| IFNab | -0.07 | 0.257 |
| IFNg | -2.673 | 2.261 |
| IFNg_GMCSF1 | -1.304 | 2.231 |
| Rv1432_day32 | -2.155 | 1.763 |
| Rv1565c_day32 | -2.267 | -0.25 |
| secA2_input | 1.495 | 1.34 |
| delta_Rv3594 | -0.375 | -0.422 |
| delta_Rv3717 | 0.258 | 0.092 |
| delta_Rv3811 | -0.336 | -0.294 |
| delta_Rv0954 | -0.236 | -2.771 |
| PonA1 | -0.561 | -2.17 |
| EccD1_KO | -1.105 | -1.177 |
| EspI_KO | -0.89 | -2.053 |
| PE35_KO | -0.152 | -1.269 |
| PPE68_KO | -0.451 | -2.348 |
| glycerol2 | -0.338 | 0.102 |
| lignocerate | -0.462 | 0.6 |
| oleate | -0.537 | -1.019 |
| phosphatidylcholine | -0.531 | 0.045 |
| acetate | -0.401 | 0.677 |
| glucAc | -0.119 | 0.533 |
| Rv0950ko | 0.528 | -1.342 |
| Rv1096ko | 0.127 | 0.199 |
| Rv3684ko | 0.403 | 0.514 |
| delta_otsA_trehalose | 0.536 | 0.35 |