TnSeqCorr

Top 10 genes with highest correlation to Rv3707c/-:

update plotcorrelationlink to info on gene
Rv3450c/eccB4 (cc=0.5301) info on Rv3450c/eccB4
Rv3911/sigM (cc=0.5154) info on Rv3911/sigM
Rv2748c/ftsK (cc=0.5139) info on Rv2748c/ftsK
Rv3661/- (cc=0.4874) info on Rv3661/-
Rv0536/galE3 (cc=0.4759) info on Rv0536/galE3
Rv0597c/- (cc=0.4539) info on Rv0597c/-
Rv1859/modC (cc=0.4538) info on Rv1859/modC
Rv0493c/- (cc=0.4434) info on Rv0493c/-
Rv2016/- (cc=0.4387) info on Rv2016/-
Rv0701/rplC (cc=0.4372) info on Rv0701/rplC

Correlation of Rv3707c/- with Rv0701/rplC

Normalized LFCs for Rv3707c/-:
(description and provenance of datasets)
Rv3707c/-Rv0701/rplC
Fe_supp_jason_reseq

0.796

0.0

low_pH_jason_reseq

-0.765

0.0

NO_jason_reseq

-0.391

0.0

B6_jason_reseq

0.398

0.0

MHCII_jason_reseq

0.661

0.0

Isoniazid02

0.406

0.0

Rifampicin4

1.199

0.0

Ethambutol3

1.063

0.0

Meropenem3

0.189

0.0

Vancomycin16

0.462

0.0

Rv2680_day32

-0.097

0.0

H37Rv_KO_MarP

0.254

0.0

hypoxia_3wks

-0.159

0.0

hypoxia_6wks

0.428

0.0

glycerol

-0.044

0.0

cholesterol

-0.263

0.0

AJ

-0.471

0.0

Bibs02

0.099

0.0

Bibs02c

-0.027

0.0

BL6

-1.348

0.0

BL6a

-0.242

0.0

BXD01

-1.024

0.0

BXD010

0.714

0.0

BXD011

-0.465

0.0

BXD03

-0.494

0.0

BXD04

-0.673

0.0

BXD05

-0.315

0.0

BXD06

-0.624

0.0

BXD07

-0.073

0.0

BXD08

-0.543

0.0

BXD09

-0.685

0.0

CAST

-0.641

0.0

CCcont

-0.823

0.0

DS01

0.953

0.0

DS02

0.477

0.0

DS04

0.271

0.0

DS0c

0.825

0.0

GP01

0.978

0.0

GP02

1.421

0.0

GP0c

0.591

0.13

NOD

0.238

0.0

NZO

-0.5

0.0

PWK

-0.139

0.0

H37Rv_KO_CtpC

-0.884

0.0

H37Rv_KO_CtpD

-0.907

0.0

H37Rv_KO_Rv1272

0.423

0.0

H37Rv_KO_SugABC

0.217

0.0

H37Rv_KO_MbtN

-1.111

0.0

Trans05

-1.377

0.0

macrophage_unactivated

-0.347

0.0

IL1

0.418

0.0

Rapamycin

0.064

0.0

Tcell

-0.238

0.0

GMCSF

0.618

0.0

IFNab

0.635

0.0

IFNg

0.577

0.0

IFNg_GMCSF1

0.66

0.0

Rv1432_day32

-0.133

0.0

Rv1565c_day32

-0.201

0.0

secA2_input

1.443

1.675

delta_Rv3594

-0.046

0.0

delta_Rv3717

0.0

0.0

delta_Rv3811

0.546

0.0

delta_Rv0954

0.092

0.0

PonA1

0.568

0.0

EccD1_KO

-0.845

-1.47

EspI_KO

-1.121

-1.668

PE35_KO

-1.33

-1.706

PPE68_KO

-0.787

-1.872

glycerol2

-0.034

0.0

lignocerate

0.195

0.0

oleate

-0.418

0.0

phosphatidylcholine

0.083

0.0

acetate

0.266

0.0

glucAc

0.073

0.0

Rv0950ko

0.081

0.0

Rv1096ko

0.081

0.0

Rv3684ko

-0.046

0.0

delta_otsA_trehalose

-0.078

0.254