Top 10 genes with highest correlation to Rv3484/cpsA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1590/- | (cc=0.7674) | info on Rv1590/- |
| Rv1568/bioA | (cc=0.7583) | info on Rv1568/bioA |
| Rv1589/bioB | (cc=0.7549) | info on Rv1589/bioB |
| Rv3871/eccCb1 | (cc=0.7541) | info on Rv3871/eccCb1 |
| Rv3869/eccB1 | (cc=0.7348) | info on Rv3869/eccB1 |
| Rv3870/eccCa1 | (cc=0.7337) | info on Rv3870/eccCa1 |
| Rv3882c/eccE1 | (cc=0.7311) | info on Rv3882c/eccE1 |
| Rv3616c/espA | (cc=0.7272) | info on Rv3616c/espA |
| Rv0655/mkl | (cc=0.7226) | info on Rv0655/mkl |
| Rv3883c/mycP1 | (cc=0.7211) | info on Rv3883c/mycP1 |
Correlation of Rv3484/cpsA with Rv1590/-
Normalized LFCs for Rv3484/cpsA:
(description and provenance of datasets)
| Rv3484/cpsA | Rv1590/- | |
| Fe_supp_jason_reseq | -1.301 | 1.809 |
| low_pH_jason_reseq | -1.318 | -2.058 |
| NO_jason_reseq | 0.95 | -0.391 |
| B6_jason_reseq | -5.113 | -5.114 |
| MHCII_jason_reseq | -3.589 | -4.029 |
| Isoniazid02 | 1.024 | -0.288 |
| Rifampicin4 | -4.021 | -0.273 |
| Ethambutol3 | 0.911 | 0.114 |
| Meropenem3 | 1.791 | 0.156 |
| Vancomycin16 | 0.332 | 0.462 |
| Rv2680_day32 | -3.023 | -4.076 |
| H37Rv_KO_MarP | -2.091 | -0.391 |
| hypoxia_3wks | 5.957 | 0.598 |
| hypoxia_6wks | 6.0 | -0.18 |
| glycerol | -5.475 | -6.0 |
| cholesterol | -1.067 | -4.706 |
| AJ | -6.0 | -6.0 |
| Bibs02 | -3.786 | -5.941 |
| Bibs02c | -6.0 | -6.0 |
| BL6 | -2.704 | -3.094 |
| BL6a | -4.585 | -5.463 |
| BXD01 | -3.759 | -3.774 |
| BXD010 | -3.373 | -4.161 |
| BXD011 | -2.753 | -3.691 |
| BXD03 | -2.307 | -4.393 |
| BXD04 | -3.084 | -4.018 |
| BXD05 | -2.786 | -3.329 |
| BXD06 | -3.852 | -4.337 |
| BXD07 | -3.754 | -4.499 |
| BXD08 | -3.838 | -4.321 |
| BXD09 | -4.195 | -4.566 |
| CAST | -5.899 | -5.586 |
| CCcont | 0.495 | 0.202 |
| DS01 | -6.0 | -6.0 |
| DS02 | -6.0 | -6.0 |
| DS04 | -3.433 | -3.596 |
| DS0c | -5.556 | -6.0 |
| GP01 | -1.814 | -2.937 |
| GP02 | -1.973 | -2.475 |
| GP0c | 1.453 | -1.317 |
| NOD | -5.199 | -4.357 |
| NZO | -5.757 | -6.0 |
| PWK | -5.482 | -5.836 |
| H37Rv_KO_CtpC | -1.429 | -4.101 |
| H37Rv_KO_CtpD | -2.123 | -1.658 |
| H37Rv_KO_Rv1272 | -3.428 | -4.196 |
| H37Rv_KO_SugABC | -0.988 | -1.708 |
| H37Rv_KO_MbtN | 3.329 | 0.152 |
| Trans05 | -2.078 | -3.603 |
| macrophage_unactivated | -2.809 | 0.145 |
| IL1 | -0.486 | -0.442 |
| Rapamycin | -1.648 | 2.243 |
| Tcell | -1.326 | 0.241 |
| GMCSF | -0.364 | 0.723 |
| IFNab | 0.674 | 1.36 |
| IFNg | -0.513 | -0.657 |
| IFNg_GMCSF1 | -1.103 | -2.209 |
| Rv1432_day32 | -3.159 | -6.0 |
| Rv1565c_day32 | -3.27 | -6.0 |
| secA2_input | -0.56 | -0.088 |
| delta_Rv3594 | 0.109 | 1.781 |
| delta_Rv3717 | 1.111 | 1.747 |
| delta_Rv3811 | 0.297 | 0.921 |
| delta_Rv0954 | -1.443 | 0.376 |
| PonA1 | -3.094 | 1.032 |
| EccD1_KO | -0.283 | -1.312 |
| EspI_KO | -0.827 | -0.556 |
| PE35_KO | -1.175 | -0.621 |
| PPE68_KO | -1.443 | -1.145 |
| glycerol2 | -1.188 | 0.0 |
| lignocerate | -1.033 | 0.168 |
| oleate | -1.202 | 0.0 |
| phosphatidylcholine | -1.188 | 0.0 |
| acetate | -0.136 | 0.0 |
| glucAc | 0.081 | 1.034 |
| Rv0950ko | -0.344 | -0.651 |
| Rv1096ko | -0.745 | 1.113 |
| Rv3684ko | 1.238 | -0.17 |
| delta_otsA_trehalose | 1.732 | 1.762 |