Top 10 genes with highest correlation to Rv3307/deoD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3463/- | (cc=0.4683) | info on Rv3463/- |
| Rv3123/- | (cc=0.4003) | info on Rv3123/- |
| Rv3445c/esxU | (cc=0.3983) | info on Rv3445c/esxU |
| Rv3055/- | (cc=0.398) | info on Rv3055/- |
| Rv3308/pmmB | (cc=0.3868) | info on Rv3308/pmmB |
| Rv3088/tgs4 | (cc=0.3737) | info on Rv3088/tgs4 |
| Rv2897c/- | (cc=0.3712) | info on Rv2897c/- |
| Rv1657/argR | (cc=0.367) | info on Rv1657/argR |
| Rv0747/PE_PGRS10 | (cc=0.3643) | info on Rv0747/PE_PGRS10 |
| Rv3062/ligB | (cc=0.3636) | info on Rv3062/ligB |
Correlation of Rv3307/deoD with Rv3445c/esxU
Normalized LFCs for Rv3307/deoD:
(description and provenance of datasets)
| Rv3307/deoD | Rv3445c/esxU | |
| Fe_supp_jason_reseq | -0.863 | -0.854 |
| low_pH_jason_reseq | -0.189 | -0.778 |
| NO_jason_reseq | 0.48 | 0.011 |
| B6_jason_reseq | -0.363 | 1.196 |
| MHCII_jason_reseq | -0.065 | 1.337 |
| Isoniazid02 | -0.675 | 0.106 |
| Rifampicin4 | -0.357 | -0.208 |
| Ethambutol3 | -0.878 | 0.054 |
| Meropenem3 | 1.343 | 1.584 |
| Vancomycin16 | -0.65 | -0.061 |
| Rv2680_day32 | -0.286 | -0.72 |
| H37Rv_KO_MarP | 0.343 | -0.801 |
| hypoxia_3wks | 0.167 | -0.379 |
| hypoxia_6wks | 0.664 | -0.205 |
| glycerol | 0.812 | -1.697 |
| cholesterol | 0.153 | -0.468 |
| AJ | -0.607 | -0.069 |
| Bibs02 | 0.423 | 0.633 |
| Bibs02c | -1.015 | 0.33 |
| BL6 | 0.012 | -1.139 |
| BL6a | -1.113 | -0.598 |
| BXD01 | -0.265 | -0.715 |
| BXD010 | -0.567 | -1.243 |
| BXD011 | -0.778 | -0.593 |
| BXD03 | 0.262 | -0.593 |
| BXD04 | 0.314 | -0.114 |
| BXD05 | -0.914 | -1.909 |
| BXD06 | -0.213 | -1.022 |
| BXD07 | -0.162 | -1.357 |
| BXD08 | 0.328 | -0.366 |
| BXD09 | -0.384 | -1.355 |
| CAST | -0.574 | -0.158 |
| CCcont | 0.524 | -1.298 |
| DS01 | -0.022 | 0.956 |
| DS02 | -1.056 | 1.1 |
| DS04 | 0.755 | 0.305 |
| DS0c | 0.965 | 0.544 |
| GP01 | -0.294 | 0.275 |
| GP02 | -0.58 | 0.421 |
| GP0c | 0.232 | 0.528 |
| NOD | -1.159 | -0.83 |
| NZO | -0.968 | -0.335 |
| PWK | 0.861 | -0.033 |
| H37Rv_KO_CtpC | -0.241 | -0.86 |
| H37Rv_KO_CtpD | -1.8 | -3.872 |
| H37Rv_KO_Rv1272 | -1.954 | -3.257 |
| H37Rv_KO_SugABC | 0.543 | -1.838 |
| H37Rv_KO_MbtN | -0.532 | -0.933 |
| Trans05 | -0.114 | -1.718 |
| macrophage_unactivated | -0.694 | 0.379 |
| IL1 | -1.246 | -0.214 |
| Rapamycin | -0.046 | -0.301 |
| Tcell | 0.186 | 0.254 |
| GMCSF | 0.15 | 0.528 |
| IFNab | -0.227 | -0.2 |
| IFNg | -1.227 | -1.053 |
| IFNg_GMCSF1 | -0.333 | 1.109 |
| Rv1432_day32 | -1.109 | 0.567 |
| Rv1565c_day32 | -0.499 | 0.232 |
| secA2_input | 0.769 | 2.519 |
| delta_Rv3594 | -0.919 | 0.0 |
| delta_Rv3717 | 0.115 | -0.189 |
| delta_Rv3811 | -0.965 | -0.335 |
| delta_Rv0954 | -1.056 | 0.758 |
| PonA1 | -0.6 | 0.427 |
| EccD1_KO | 1.625 | 0.47 |
| EspI_KO | -0.174 | 0.747 |
| PE35_KO | 0.496 | 1.158 |
| PPE68_KO | -0.038 | -0.022 |
| glycerol2 | 0.553 | 0.867 |
| lignocerate | 0.0 | 0.96 |
| oleate | 0.449 | 0.988 |
| phosphatidylcholine | 0.789 | 0.81 |
| acetate | -0.153 | 1.335 |
| glucAc | 0.079 | 0.023 |
| Rv0950ko | 0.383 | 1.375 |
| Rv1096ko | 0.697 | 2.576 |
| Rv3684ko | 0.956 | 1.772 |
| delta_otsA_trehalose | 0.608 | -1.792 |