Top 10 genes with highest correlation to Rv3307/deoD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3463/- | (cc=0.4683) | info on Rv3463/- |
| Rv3123/- | (cc=0.4003) | info on Rv3123/- |
| Rv3445c/esxU | (cc=0.3983) | info on Rv3445c/esxU |
| Rv3055/- | (cc=0.398) | info on Rv3055/- |
| Rv3308/pmmB | (cc=0.3868) | info on Rv3308/pmmB |
| Rv3088/tgs4 | (cc=0.3737) | info on Rv3088/tgs4 |
| Rv2897c/- | (cc=0.3712) | info on Rv2897c/- |
| Rv1657/argR | (cc=0.367) | info on Rv1657/argR |
| Rv0747/PE_PGRS10 | (cc=0.3643) | info on Rv0747/PE_PGRS10 |
| Rv3062/ligB | (cc=0.3636) | info on Rv3062/ligB |
Correlation of Rv3307/deoD with Rv3088/tgs4
Normalized LFCs for Rv3307/deoD:
(description and provenance of datasets)
| Rv3307/deoD | Rv3088/tgs4 | |
| Fe_supp_jason_reseq | -0.863 | 0.429 |
| low_pH_jason_reseq | -0.189 | -0.465 |
| NO_jason_reseq | 0.48 | -0.074 |
| B6_jason_reseq | -0.363 | -0.86 |
| MHCII_jason_reseq | -0.065 | 0.437 |
| Isoniazid02 | -0.675 | 0.307 |
| Rifampicin4 | -0.357 | -0.249 |
| Ethambutol3 | -0.878 | 0.88 |
| Meropenem3 | 1.343 | -0.131 |
| Vancomycin16 | -0.65 | 0.289 |
| Rv2680_day32 | -0.286 | -0.073 |
| H37Rv_KO_MarP | 0.343 | 0.646 |
| hypoxia_3wks | 0.167 | -0.128 |
| hypoxia_6wks | 0.664 | 0.783 |
| glycerol | 0.812 | 0.154 |
| cholesterol | 0.153 | -0.085 |
| AJ | -0.607 | 0.296 |
| Bibs02 | 0.423 | 0.065 |
| Bibs02c | -1.015 | 0.015 |
| BL6 | 0.012 | -0.151 |
| BL6a | -1.113 | 0.41 |
| BXD01 | -0.265 | -0.301 |
| BXD010 | -0.567 | 0.106 |
| BXD011 | -0.778 | 0.452 |
| BXD03 | 0.262 | -0.06 |
| BXD04 | 0.314 | -0.297 |
| BXD05 | -0.914 | 0.751 |
| BXD06 | -0.213 | 0.277 |
| BXD07 | -0.162 | 0.295 |
| BXD08 | 0.328 | 0.352 |
| BXD09 | -0.384 | 0.417 |
| CAST | -0.574 | -0.574 |
| CCcont | 0.524 | -0.134 |
| DS01 | -0.022 | 0.084 |
| DS02 | -1.056 | -0.706 |
| DS04 | 0.755 | -0.299 |
| DS0c | 0.965 | 0.121 |
| GP01 | -0.294 | 0.144 |
| GP02 | -0.58 | 1.367 |
| GP0c | 0.232 | 0.481 |
| NOD | -1.159 | 0.425 |
| NZO | -0.968 | -0.809 |
| PWK | 0.861 | 0.348 |
| H37Rv_KO_CtpC | -0.241 | -0.264 |
| H37Rv_KO_CtpD | -1.8 | -1.558 |
| H37Rv_KO_Rv1272 | -1.954 | -0.665 |
| H37Rv_KO_SugABC | 0.543 | 0.725 |
| H37Rv_KO_MbtN | -0.532 | -1.154 |
| Trans05 | -0.114 | 0.423 |
| macrophage_unactivated | -0.694 | -0.934 |
| IL1 | -1.246 | 0.047 |
| Rapamycin | -0.046 | 0.049 |
| Tcell | 0.186 | -0.71 |
| GMCSF | 0.15 | 0.462 |
| IFNab | -0.227 | -0.659 |
| IFNg | -1.227 | -0.412 |
| IFNg_GMCSF1 | -0.333 | -0.182 |
| Rv1432_day32 | -1.109 | -0.338 |
| Rv1565c_day32 | -0.499 | -1.401 |
| secA2_input | 0.769 | 1.268 |
| delta_Rv3594 | -0.919 | -0.936 |
| delta_Rv3717 | 0.115 | -1.214 |
| delta_Rv3811 | -0.965 | -1.505 |
| delta_Rv0954 | -1.056 | -1.483 |
| PonA1 | -0.6 | -0.706 |
| EccD1_KO | 1.625 | 0.151 |
| EspI_KO | -0.174 | -0.24 |
| PE35_KO | 0.496 | -0.353 |
| PPE68_KO | -0.038 | -0.512 |
| glycerol2 | 0.553 | 0.764 |
| lignocerate | 0.0 | 0.939 |
| oleate | 0.449 | 0.227 |
| phosphatidylcholine | 0.789 | 0.679 |
| acetate | -0.153 | 0.924 |
| glucAc | 0.079 | 0.385 |
| Rv0950ko | 0.383 | 0.588 |
| Rv1096ko | 0.697 | 0.413 |
| Rv3684ko | 0.956 | 0.347 |
| delta_otsA_trehalose | 0.608 | 0.73 |