Top 10 genes with highest correlation to Rv3307/deoD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3463/- | (cc=0.4683) | info on Rv3463/- |
| Rv3123/- | (cc=0.4003) | info on Rv3123/- |
| Rv3445c/esxU | (cc=0.3983) | info on Rv3445c/esxU |
| Rv3055/- | (cc=0.398) | info on Rv3055/- |
| Rv3308/pmmB | (cc=0.3868) | info on Rv3308/pmmB |
| Rv3088/tgs4 | (cc=0.3737) | info on Rv3088/tgs4 |
| Rv2897c/- | (cc=0.3712) | info on Rv2897c/- |
| Rv1657/argR | (cc=0.367) | info on Rv1657/argR |
| Rv0747/PE_PGRS10 | (cc=0.3643) | info on Rv0747/PE_PGRS10 |
| Rv3062/ligB | (cc=0.3636) | info on Rv3062/ligB |
Correlation of Rv3307/deoD with Rv3463/-
Normalized LFCs for Rv3307/deoD:
(description and provenance of datasets)
| Rv3307/deoD | Rv3463/- | |
| Fe_supp_jason_reseq | -0.863 | -0.474 |
| low_pH_jason_reseq | -0.189 | -0.557 |
| NO_jason_reseq | 0.48 | -0.732 |
| B6_jason_reseq | -0.363 | 0.192 |
| MHCII_jason_reseq | -0.065 | -0.018 |
| Isoniazid02 | -0.675 | -0.997 |
| Rifampicin4 | -0.357 | -0.046 |
| Ethambutol3 | -0.878 | 0.491 |
| Meropenem3 | 1.343 | 0.906 |
| Vancomycin16 | -0.65 | -0.249 |
| Rv2680_day32 | -0.286 | -0.349 |
| H37Rv_KO_MarP | 0.343 | 1.239 |
| hypoxia_3wks | 0.167 | 0.104 |
| hypoxia_6wks | 0.664 | -0.48 |
| glycerol | 0.812 | 0.436 |
| cholesterol | 0.153 | -0.369 |
| AJ | -0.607 | -0.348 |
| Bibs02 | 0.423 | -0.436 |
| Bibs02c | -1.015 | 0.149 |
| BL6 | 0.012 | -0.477 |
| BL6a | -1.113 | -0.297 |
| BXD01 | -0.265 | -0.246 |
| BXD010 | -0.567 | -0.202 |
| BXD011 | -0.778 | -0.601 |
| BXD03 | 0.262 | -0.311 |
| BXD04 | 0.314 | 0.516 |
| BXD05 | -0.914 | 0.026 |
| BXD06 | -0.213 | -0.296 |
| BXD07 | -0.162 | -0.377 |
| BXD08 | 0.328 | 0.135 |
| BXD09 | -0.384 | -0.496 |
| CAST | -0.574 | 0.409 |
| CCcont | 0.524 | -0.248 |
| DS01 | -0.022 | -0.265 |
| DS02 | -1.056 | 0.469 |
| DS04 | 0.755 | 0.365 |
| DS0c | 0.965 | 1.037 |
| GP01 | -0.294 | -0.833 |
| GP02 | -0.58 | -0.753 |
| GP0c | 0.232 | -0.626 |
| NOD | -1.159 | 0.36 |
| NZO | -0.968 | 0.25 |
| PWK | 0.861 | 0.077 |
| H37Rv_KO_CtpC | -0.241 | -0.033 |
| H37Rv_KO_CtpD | -1.8 | -1.108 |
| H37Rv_KO_Rv1272 | -1.954 | -0.976 |
| H37Rv_KO_SugABC | 0.543 | 0.465 |
| H37Rv_KO_MbtN | -0.532 | -0.508 |
| Trans05 | -0.114 | -0.629 |
| macrophage_unactivated | -0.694 | -1.689 |
| IL1 | -1.246 | -0.887 |
| Rapamycin | -0.046 | -1.059 |
| Tcell | 0.186 | -0.124 |
| GMCSF | 0.15 | 0.0 |
| IFNab | -0.227 | -1.079 |
| IFNg | -1.227 | -0.799 |
| IFNg_GMCSF1 | -0.333 | -0.729 |
| Rv1432_day32 | -1.109 | -0.438 |
| Rv1565c_day32 | -0.499 | -0.69 |
| secA2_input | 0.769 | 0.964 |
| delta_Rv3594 | -0.919 | -0.659 |
| delta_Rv3717 | 0.115 | -0.059 |
| delta_Rv3811 | -0.965 | -1.136 |
| delta_Rv0954 | -1.056 | -0.682 |
| PonA1 | -0.6 | -0.815 |
| EccD1_KO | 1.625 | 0.03 |
| EspI_KO | -0.174 | 0.148 |
| PE35_KO | 0.496 | -0.105 |
| PPE68_KO | -0.038 | 0.0 |
| glycerol2 | 0.553 | 1.401 |
| lignocerate | 0.0 | 0.426 |
| oleate | 0.449 | 0.024 |
| phosphatidylcholine | 0.789 | 0.819 |
| acetate | -0.153 | -0.414 |
| glucAc | 0.079 | -0.555 |
| Rv0950ko | 0.383 | 0.639 |
| Rv1096ko | 0.697 | 0.317 |
| Rv3684ko | 0.956 | -0.973 |
| delta_otsA_trehalose | 0.608 | 0.0 |