Top 10 genes with highest correlation to Rv3307/deoD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3463/- | (cc=0.4683) | info on Rv3463/- |
| Rv3123/- | (cc=0.4003) | info on Rv3123/- |
| Rv3445c/esxU | (cc=0.3983) | info on Rv3445c/esxU |
| Rv3055/- | (cc=0.398) | info on Rv3055/- |
| Rv3308/pmmB | (cc=0.3868) | info on Rv3308/pmmB |
| Rv3088/tgs4 | (cc=0.3737) | info on Rv3088/tgs4 |
| Rv2897c/- | (cc=0.3712) | info on Rv2897c/- |
| Rv1657/argR | (cc=0.367) | info on Rv1657/argR |
| Rv0747/PE_PGRS10 | (cc=0.3643) | info on Rv0747/PE_PGRS10 |
| Rv3062/ligB | (cc=0.3636) | info on Rv3062/ligB |
Correlation of Rv3307/deoD with Rv3055/-
Normalized LFCs for Rv3307/deoD:
(description and provenance of datasets)
| Rv3307/deoD | Rv3055/- | |
| Fe_supp_jason_reseq | -0.863 | -0.038 |
| low_pH_jason_reseq | -0.189 | -1.819 |
| NO_jason_reseq | 0.48 | -1.748 |
| B6_jason_reseq | -0.363 | -0.069 |
| MHCII_jason_reseq | -0.065 | -0.203 |
| Isoniazid02 | -0.675 | 0.0 |
| Rifampicin4 | -0.357 | 0.306 |
| Ethambutol3 | -0.878 | 0.95 |
| Meropenem3 | 1.343 | 1.065 |
| Vancomycin16 | -0.65 | 0.554 |
| Rv2680_day32 | -0.286 | 0.761 |
| H37Rv_KO_MarP | 0.343 | 0.354 |
| hypoxia_3wks | 0.167 | -0.347 |
| hypoxia_6wks | 0.664 | -1.042 |
| glycerol | 0.812 | -0.515 |
| cholesterol | 0.153 | -1.488 |
| AJ | -0.607 | 0.042 |
| Bibs02 | 0.423 | -0.523 |
| Bibs02c | -1.015 | -0.703 |
| BL6 | 0.012 | -0.993 |
| BL6a | -1.113 | -0.894 |
| BXD01 | -0.265 | -0.426 |
| BXD010 | -0.567 | -1.402 |
| BXD011 | -0.778 | -0.563 |
| BXD03 | 0.262 | -0.923 |
| BXD04 | 0.314 | 0.632 |
| BXD05 | -0.914 | -0.967 |
| BXD06 | -0.213 | -1.168 |
| BXD07 | -0.162 | -0.913 |
| BXD08 | 0.328 | -1.242 |
| BXD09 | -0.384 | -1.333 |
| CAST | -0.574 | 0.123 |
| CCcont | 0.524 | -0.225 |
| DS01 | -0.022 | -0.958 |
| DS02 | -1.056 | -1.966 |
| DS04 | 0.755 | 0.298 |
| DS0c | 0.965 | 0.013 |
| GP01 | -0.294 | 0.765 |
| GP02 | -0.58 | 2.108 |
| GP0c | 0.232 | 1.447 |
| NOD | -1.159 | -0.718 |
| NZO | -0.968 | -0.571 |
| PWK | 0.861 | -0.692 |
| H37Rv_KO_CtpC | -0.241 | -1.75 |
| H37Rv_KO_CtpD | -1.8 | -0.895 |
| H37Rv_KO_Rv1272 | -1.954 | -1.317 |
| H37Rv_KO_SugABC | 0.543 | -0.799 |
| H37Rv_KO_MbtN | -0.532 | -0.993 |
| Trans05 | -0.114 | -1.181 |
| macrophage_unactivated | -0.694 | 0.593 |
| IL1 | -1.246 | -0.528 |
| Rapamycin | -0.046 | 0.052 |
| Tcell | 0.186 | -0.58 |
| GMCSF | 0.15 | 0.613 |
| IFNab | -0.227 | -1.088 |
| IFNg | -1.227 | -2.248 |
| IFNg_GMCSF1 | -0.333 | 0.817 |
| Rv1432_day32 | -1.109 | -1.304 |
| Rv1565c_day32 | -0.499 | 0.147 |
| secA2_input | 0.769 | 1.935 |
| delta_Rv3594 | -0.919 | -1.837 |
| delta_Rv3717 | 0.115 | -1.419 |
| delta_Rv3811 | -0.965 | -1.404 |
| delta_Rv0954 | -1.056 | -1.24 |
| PonA1 | -0.6 | -0.39 |
| EccD1_KO | 1.625 | 2.911 |
| EspI_KO | -0.174 | 1.517 |
| PE35_KO | 0.496 | 2.214 |
| PPE68_KO | -0.038 | 3.443 |
| glycerol2 | 0.553 | 1.407 |
| lignocerate | 0.0 | 0.838 |
| oleate | 0.449 | 0.502 |
| phosphatidylcholine | 0.789 | 1.241 |
| acetate | -0.153 | 0.083 |
| glucAc | 0.079 | 0.164 |
| Rv0950ko | 0.383 | -0.727 |
| Rv1096ko | 0.697 | 1.716 |
| Rv3684ko | 0.956 | 0.252 |
| delta_otsA_trehalose | 0.608 | -0.491 |