Top 10 genes with highest correlation to Rv3278c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0055/rpsR1 | (cc=0.6948) | info on Rv0055/rpsR1 |
| Rv2430c/PPE41 | (cc=0.6406) | info on Rv2430c/PPE41 |
| Rv0805/- | (cc=0.6386) | info on Rv0805/- |
| Rv1072/- | (cc=0.6209) | info on Rv1072/- |
| Rv0371c/- | (cc=0.6117) | info on Rv0371c/- |
| Rv3142c/- | (cc=0.6095) | info on Rv3142c/- |
| Rv0668/rpoC | (cc=0.6074) | info on Rv0668/rpoC |
| Rv1239c/corA | (cc=0.5995) | info on Rv1239c/corA |
| Rv2793c/truB | (cc=0.5974) | info on Rv2793c/truB |
| Rv3421c/- | (cc=0.5842) | info on Rv3421c/- |
Correlation of Rv3278c/- with Rv0668/rpoC
Normalized LFCs for Rv3278c/-:
(description and provenance of datasets)
| Rv3278c/- | Rv0668/rpoC | |
| Fe_supp_jason_reseq | 1.468 | 0.319 |
| low_pH_jason_reseq | 0.462 | 2.259 |
| NO_jason_reseq | 0.307 | 2.809 |
| B6_jason_reseq | -0.034 | 1.836 |
| MHCII_jason_reseq | -0.278 | -0.149 |
| Isoniazid02 | 1.231 | -0.108 |
| Rifampicin4 | -0.417 | 1.172 |
| Ethambutol3 | -1.301 | -0.626 |
| Meropenem3 | 0.45 | -0.182 |
| Vancomycin16 | -0.117 | -0.196 |
| Rv2680_day32 | -0.947 | 0.0 |
| H37Rv_KO_MarP | -0.313 | 0.203 |
| hypoxia_3wks | -0.08 | -1.934 |
| hypoxia_6wks | -0.944 | 1.293 |
| glycerol | 0.089 | 0.12 |
| cholesterol | 0.435 | 0.0 |
| AJ | 2.054 | 0.934 |
| Bibs02 | -0.86 | -0.371 |
| Bibs02c | 0.405 | 0.124 |
| BL6 | 1.231 | 1.017 |
| BL6a | 1.83 | 1.175 |
| BXD01 | 1.482 | 2.02 |
| BXD010 | 2.103 | 1.496 |
| BXD011 | 1.654 | 2.698 |
| BXD03 | 2.582 | 1.173 |
| BXD04 | 2.541 | 2.865 |
| BXD05 | 2.114 | 2.213 |
| BXD06 | 2.357 | 1.994 |
| BXD07 | 1.526 | 1.825 |
| BXD08 | 1.779 | 2.118 |
| BXD09 | 1.464 | 0.974 |
| CAST | 1.351 | 1.023 |
| CCcont | 2.094 | 0.663 |
| DS01 | 0.814 | 0.522 |
| DS02 | 0.603 | 0.129 |
| DS04 | 1.221 | 0.523 |
| DS0c | 1.216 | -0.137 |
| GP01 | -0.537 | -0.277 |
| GP02 | 1.062 | -0.303 |
| GP0c | -0.642 | 0.577 |
| NOD | 1.808 | -0.142 |
| NZO | 1.519 | 0.886 |
| PWK | 3.493 | 1.537 |
| H37Rv_KO_CtpC | -0.385 | -0.455 |
| H37Rv_KO_CtpD | 0.074 | 0.51 |
| H37Rv_KO_Rv1272 | 1.648 | 0.239 |
| H37Rv_KO_SugABC | 0.555 | 1.074 |
| H37Rv_KO_MbtN | 0.605 | 1.0 |
| Trans05 | 1.446 | 1.024 |
| macrophage_unactivated | -0.426 | -0.581 |
| IL1 | -1.883 | -1.406 |
| Rapamycin | -1.544 | -0.368 |
| Tcell | -0.544 | 0.362 |
| GMCSF | -0.943 | -1.046 |
| IFNab | -0.928 | -0.363 |
| IFNg | 0.182 | -0.673 |
| IFNg_GMCSF1 | 0.848 | -1.012 |
| Rv1432_day32 | 0.08 | 0.139 |
| Rv1565c_day32 | -0.218 | -0.588 |
| secA2_input | -0.229 | 0.445 |
| delta_Rv3594 | -0.714 | -0.061 |
| delta_Rv3717 | -0.904 | 1.233 |
| delta_Rv3811 | -0.998 | 0.559 |
| delta_Rv0954 | -1.974 | -1.562 |
| PonA1 | -1.813 | -1.2 |
| EccD1_KO | -0.332 | 0.0 |
| EspI_KO | -0.154 | 0.211 |
| PE35_KO | -0.239 | 0.42 |
| PPE68_KO | -0.262 | -0.512 |
| glycerol2 | -0.343 | -1.073 |
| lignocerate | 1.15 | -0.22 |
| oleate | -1.109 | -1.086 |
| phosphatidylcholine | 0.64 | 0.224 |
| acetate | 0.602 | 0.507 |
| glucAc | 0.61 | 0.279 |
| Rv0950ko | -0.256 | 0.0 |
| Rv1096ko | 0.0 | -0.832 |
| Rv3684ko | 0.059 | -1.159 |
| delta_otsA_trehalose | -0.945 | -0.773 |