TnSeqCorr

Top 10 genes with highest correlation to Rv3167c/-:

update plotcorrelationlink to info on gene
Rv1290A/- (cc=0.522) info on Rv1290A/-
Rv2625c/- (cc=0.5004) info on Rv2625c/-
Rv0570/nrdZ (cc=0.4912) info on Rv0570/nrdZ
Rv1180/pks3 (cc=0.4878) info on Rv1180/pks3
Rv2515c/- (cc=0.4868) info on Rv2515c/-
Rv0850/- (cc=0.4843) info on Rv0850/-
Rv2028c/- (cc=0.4803) info on Rv2028c/-
Rv0758/phoR (cc=0.4794) info on Rv0758/phoR
Rv1052/- (cc=0.4695) info on Rv1052/-
Rv3062/ligB (cc=0.4623) info on Rv3062/ligB

Correlation of Rv3167c/- with Rv1290A/-

Normalized LFCs for Rv3167c/-:
(description and provenance of datasets)
Rv3167c/-Rv1290A/-
Fe_supp_jason_reseq

-0.118

1.441

low_pH_jason_reseq

2.17

-1.282

NO_jason_reseq

0.307

0.11

B6_jason_reseq

0.812

-0.771

MHCII_jason_reseq

-0.205

0.935

Isoniazid02

-0.805

-0.685

Rifampicin4

-0.785

-0.13

Ethambutol3

-0.294

-0.349

Meropenem3

-0.272

1.52

Vancomycin16

-0.366

-0.194

Rv2680_day32

0.912

-0.359

H37Rv_KO_MarP

-0.497

0.025

hypoxia_3wks

0.55

-0.339

hypoxia_6wks

0.791

-1.539

glycerol

-0.958

-1.624

cholesterol

-1.104

-0.218

AJ

0.218

-0.602

Bibs02

-0.069

-0.223

Bibs02c

0.076

-0.796

BL6

0.661

-0.1

BL6a

-0.024

-1.538

BXD01

-0.618

-1.563

BXD010

-0.032

-0.559

BXD011

-1.387

-1.384

BXD03

-0.899

-0.617

BXD04

-1.69

-1.76

BXD05

-1.06

-2.96

BXD06

-1.087

-1.187

BXD07

0.177

-1.505

BXD08

-0.915

-2.361

BXD09

-1.001

-1.382

CAST

0.028

-0.06

CCcont

-0.326

-0.937

DS01

-0.7

-1.032

DS02

-0.989

-0.993

DS04

-0.048

0.119

DS0c

-1.204

-1.215

GP01

-1.349

-0.574

GP02

-1.064

2.507

GP0c

-0.032

-0.337

NOD

-0.456

-0.371

NZO

-1.624

-1.835

PWK

0.024

0.365

H37Rv_KO_CtpC

-1.238

0.743

H37Rv_KO_CtpD

-2.21

-2.438

H37Rv_KO_Rv1272

-1.691

-1.022

H37Rv_KO_SugABC

0.588

1.676

H37Rv_KO_MbtN

0.153

1.666

Trans05

-1.334

0.298

macrophage_unactivated

-1.092

-1.259

IL1

-0.816

0.552

Rapamycin

0.396

0.436

Tcell

-1.29

-0.166

GMCSF

-1.046

-1.415

IFNab

-1.433

-2.331

IFNg

-1.339

-0.422

IFNg_GMCSF1

-0.864

-0.496

Rv1432_day32

-0.92

0.0

Rv1565c_day32

-0.411

0.556

secA2_input

-1.263

-1.67

delta_Rv3594

-0.046

0.092

delta_Rv3717

0.405

-0.96

delta_Rv3811

-0.138

-0.29

delta_Rv0954

-0.039

-0.596

PonA1

0.035

-0.439

EccD1_KO

0.454

-0.086

EspI_KO

0.394

1.791

PE35_KO

1.105

2.345

PPE68_KO

1.12

1.955

glycerol2

0.521

1.401

lignocerate

0.343

1.386

oleate

0.761

0.0

phosphatidylcholine

0.779

1.594

acetate

0.924

2.79

glucAc

0.493

1.825

Rv0950ko

1.414

1.251

Rv1096ko

1.873

1.028

Rv3684ko

0.57

2.021

delta_otsA_trehalose

-1.68

-1.964