Top 10 genes with highest correlation to Rv3129/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1653/argJ | (cc=0.5054) | info on Rv1653/argJ |
| Rv2761c/hsdS | (cc=0.4722) | info on Rv2761c/hsdS |
| Rv0265c/- | (cc=0.4607) | info on Rv0265c/- |
| Rv0840c/pip | (cc=0.4562) | info on Rv0840c/pip |
| Rv1708/- | (cc=0.4551) | info on Rv1708/- |
| Rv1453/- | (cc=0.4486) | info on Rv1453/- |
| Rv1140/- | (cc=0.4477) | info on Rv1140/- |
| Rv0233/nrdB | (cc=0.4435) | info on Rv0233/nrdB |
| Rv3591c/- | (cc=0.4423) | info on Rv3591c/- |
| Rv2725c/hflX | (cc=0.4329) | info on Rv2725c/hflX |
Correlation of Rv3129/- with Rv2761c/hsdS
Normalized LFCs for Rv3129/-:
(description and provenance of datasets)
| Rv3129/- | Rv2761c/hsdS | |
| Fe_supp_jason_reseq | 0.144 | 0.737 |
| low_pH_jason_reseq | -0.162 | 0.299 |
| NO_jason_reseq | 0.0 | -0.113 |
| B6_jason_reseq | 0.925 | 0.601 |
| MHCII_jason_reseq | 2.625 | 0.41 |
| Isoniazid02 | 4.243 | 0.936 |
| Rifampicin4 | -1.427 | -0.745 |
| Ethambutol3 | -0.882 | 0.536 |
| Meropenem3 | -4.097 | 0.12 |
| Vancomycin16 | -1.425 | -0.589 |
| Rv2680_day32 | 1.627 | 1.545 |
| H37Rv_KO_MarP | -0.752 | 0.151 |
| hypoxia_3wks | 1.172 | -0.873 |
| hypoxia_6wks | 1.157 | 0.125 |
| glycerol | 0.607 | -0.171 |
| cholesterol | 0.665 | -0.236 |
| AJ | -0.472 | 0.131 |
| Bibs02 | -0.898 | 0.366 |
| Bibs02c | 0.762 | 0.186 |
| BL6 | -1.212 | 0.977 |
| BL6a | 0.924 | -0.192 |
| BXD01 | -2.722 | -0.746 |
| BXD010 | 0.0 | 0.281 |
| BXD011 | -1.306 | 0.18 |
| BXD03 | -0.664 | -0.296 |
| BXD04 | -1.965 | 0.404 |
| BXD05 | -2.354 | -0.256 |
| BXD06 | -2.056 | 0.015 |
| BXD07 | -2.686 | 0.078 |
| BXD08 | -0.219 | -0.31 |
| BXD09 | -1.81 | 0.155 |
| CAST | -0.829 | -0.195 |
| CCcont | -1.575 | 0.068 |
| DS01 | 2.933 | 0.334 |
| DS02 | 3.266 | 0.747 |
| DS04 | 0.294 | 0.838 |
| DS0c | 1.241 | 1.174 |
| GP01 | -2.063 | -0.917 |
| GP02 | -1.967 | -1.047 |
| GP0c | -0.942 | -0.745 |
| NOD | -1.064 | -0.277 |
| NZO | -0.134 | -0.095 |
| PWK | -1.337 | -0.699 |
| H37Rv_KO_CtpC | -1.975 | 0.544 |
| H37Rv_KO_CtpD | 0.978 | 1.134 |
| H37Rv_KO_Rv1272 | -3.334 | 0.296 |
| H37Rv_KO_SugABC | -1.624 | -0.814 |
| H37Rv_KO_MbtN | -2.154 | -0.633 |
| Trans05 | -2.629 | 0.274 |
| macrophage_unactivated | 0.082 | 0.17 |
| IL1 | -0.685 | 0.317 |
| Rapamycin | 0.611 | -0.058 |
| Tcell | 0.254 | 0.0 |
| GMCSF | -1.238 | 0.143 |
| IFNab | -0.892 | 0.272 |
| IFNg | 2.812 | 0.842 |
| IFNg_GMCSF1 | -0.349 | 0.647 |
| Rv1432_day32 | 1.447 | 0.33 |
| Rv1565c_day32 | 0.218 | -0.4 |
| secA2_input | -0.955 | 0.031 |
| delta_Rv3594 | -0.176 | 0.566 |
| delta_Rv3717 | -2.766 | 0.028 |
| delta_Rv3811 | 0.995 | -0.244 |
| delta_Rv0954 | -3.489 | 0.057 |
| PonA1 | -0.437 | 0.504 |
| EccD1_KO | 2.46 | 1.21 |
| EspI_KO | 1.777 | 1.489 |
| PE35_KO | 1.978 | 1.628 |
| PPE68_KO | 1.683 | 2.064 |
| glycerol2 | -0.694 | 0.27 |
| lignocerate | -1.275 | 1.048 |
| oleate | 0.32 | -0.52 |
| phosphatidylcholine | -0.989 | 0.662 |
| acetate | -0.795 | 0.64 |
| glucAc | -2.449 | 0.375 |
| Rv0950ko | 0.793 | 0.296 |
| Rv1096ko | 1.954 | 1.662 |
| Rv3684ko | 1.647 | 0.796 |
| delta_otsA_trehalose | -0.328 | -0.189 |