Top 10 genes with highest correlation to Rv3129/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1653/argJ | (cc=0.5054) | info on Rv1653/argJ |
| Rv2761c/hsdS | (cc=0.4722) | info on Rv2761c/hsdS |
| Rv0265c/- | (cc=0.4607) | info on Rv0265c/- |
| Rv0840c/pip | (cc=0.4562) | info on Rv0840c/pip |
| Rv1708/- | (cc=0.4551) | info on Rv1708/- |
| Rv1453/- | (cc=0.4486) | info on Rv1453/- |
| Rv1140/- | (cc=0.4477) | info on Rv1140/- |
| Rv0233/nrdB | (cc=0.4435) | info on Rv0233/nrdB |
| Rv3591c/- | (cc=0.4423) | info on Rv3591c/- |
| Rv2725c/hflX | (cc=0.4329) | info on Rv2725c/hflX |
Correlation of Rv3129/- with Rv1453/-
Normalized LFCs for Rv3129/-:
(description and provenance of datasets)
| Rv3129/- | Rv1453/- | |
| Fe_supp_jason_reseq | 0.144 | 0.72 |
| low_pH_jason_reseq | -0.162 | 0.659 |
| NO_jason_reseq | 0.0 | -0.672 |
| B6_jason_reseq | 0.925 | 2.065 |
| MHCII_jason_reseq | 2.625 | 1.373 |
| Isoniazid02 | 4.243 | 1.302 |
| Rifampicin4 | -1.427 | 0.219 |
| Ethambutol3 | -0.882 | 0.876 |
| Meropenem3 | -4.097 | 0.7 |
| Vancomycin16 | -1.425 | 0.114 |
| Rv2680_day32 | 1.627 | 0.241 |
| H37Rv_KO_MarP | -0.752 | 0.793 |
| hypoxia_3wks | 1.172 | 0.905 |
| hypoxia_6wks | 1.157 | 1.054 |
| glycerol | 0.607 | -0.025 |
| cholesterol | 0.665 | -0.156 |
| AJ | -0.472 | 0.35 |
| Bibs02 | -0.898 | 0.738 |
| Bibs02c | 0.762 | 0.526 |
| BL6 | -1.212 | -1.143 |
| BL6a | 0.924 | -0.062 |
| BXD01 | -2.722 | -0.497 |
| BXD010 | 0.0 | -0.054 |
| BXD011 | -1.306 | -0.022 |
| BXD03 | -0.664 | -0.914 |
| BXD04 | -1.965 | -0.5 |
| BXD05 | -2.354 | -0.657 |
| BXD06 | -2.056 | -0.426 |
| BXD07 | -2.686 | -0.491 |
| BXD08 | -0.219 | -0.219 |
| BXD09 | -1.81 | -0.257 |
| CAST | -0.829 | -0.048 |
| CCcont | -1.575 | -1.652 |
| DS01 | 2.933 | 0.818 |
| DS02 | 3.266 | 0.756 |
| DS04 | 0.294 | 1.053 |
| DS0c | 1.241 | 1.053 |
| GP01 | -2.063 | -0.652 |
| GP02 | -1.967 | -1.909 |
| GP0c | -0.942 | -1.531 |
| NOD | -1.064 | 0.251 |
| NZO | -0.134 | 0.152 |
| PWK | -1.337 | 0.436 |
| H37Rv_KO_CtpC | -1.975 | -1.253 |
| H37Rv_KO_CtpD | 0.978 | 0.017 |
| H37Rv_KO_Rv1272 | -3.334 | -0.603 |
| H37Rv_KO_SugABC | -1.624 | -0.68 |
| H37Rv_KO_MbtN | -2.154 | -0.386 |
| Trans05 | -2.629 | -0.9 |
| macrophage_unactivated | 0.082 | -0.78 |
| IL1 | -0.685 | -0.528 |
| Rapamycin | 0.611 | -0.344 |
| Tcell | 0.254 | -0.261 |
| GMCSF | -1.238 | -0.232 |
| IFNab | -0.892 | -0.538 |
| IFNg | 2.812 | -0.794 |
| IFNg_GMCSF1 | -0.349 | -0.119 |
| Rv1432_day32 | 1.447 | 0.072 |
| Rv1565c_day32 | 0.218 | 0.264 |
| secA2_input | -0.955 | 0.41 |
| delta_Rv3594 | -0.176 | -0.118 |
| delta_Rv3717 | -2.766 | -1.099 |
| delta_Rv3811 | 0.995 | 0.079 |
| delta_Rv0954 | -3.489 | -0.846 |
| PonA1 | -0.437 | -0.374 |
| EccD1_KO | 2.46 | 0.503 |
| EspI_KO | 1.777 | -0.151 |
| PE35_KO | 1.978 | 0.277 |
| PPE68_KO | 1.683 | 0.336 |
| glycerol2 | -0.694 | 0.338 |
| lignocerate | -1.275 | 0.073 |
| oleate | 0.32 | 0.525 |
| phosphatidylcholine | -0.989 | 0.43 |
| acetate | -0.795 | -0.136 |
| glucAc | -2.449 | -0.174 |
| Rv0950ko | 0.793 | -0.32 |
| Rv1096ko | 1.954 | -0.787 |
| Rv3684ko | 1.647 | -0.331 |
| delta_otsA_trehalose | -0.328 | 1.851 |