Top 10 genes with highest correlation to Rv3129/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1653/argJ | (cc=0.5054) | info on Rv1653/argJ |
| Rv2761c/hsdS | (cc=0.4722) | info on Rv2761c/hsdS |
| Rv0265c/- | (cc=0.4607) | info on Rv0265c/- |
| Rv0840c/pip | (cc=0.4562) | info on Rv0840c/pip |
| Rv1708/- | (cc=0.4551) | info on Rv1708/- |
| Rv1453/- | (cc=0.4486) | info on Rv1453/- |
| Rv1140/- | (cc=0.4477) | info on Rv1140/- |
| Rv0233/nrdB | (cc=0.4435) | info on Rv0233/nrdB |
| Rv3591c/- | (cc=0.4423) | info on Rv3591c/- |
| Rv2725c/hflX | (cc=0.4329) | info on Rv2725c/hflX |
Correlation of Rv3129/- with Rv2725c/hflX
Normalized LFCs for Rv3129/-:
(description and provenance of datasets)
| Rv3129/- | Rv2725c/hflX | |
| Fe_supp_jason_reseq | 0.144 | -0.161 |
| low_pH_jason_reseq | -0.162 | -0.228 |
| NO_jason_reseq | 0.0 | 0.457 |
| B6_jason_reseq | 0.925 | 0.476 |
| MHCII_jason_reseq | 2.625 | 0.458 |
| Isoniazid02 | 4.243 | 1.215 |
| Rifampicin4 | -1.427 | 0.03 |
| Ethambutol3 | -0.882 | 0.161 |
| Meropenem3 | -4.097 | 1.511 |
| Vancomycin16 | -1.425 | 0.045 |
| Rv2680_day32 | 1.627 | 0.59 |
| H37Rv_KO_MarP | -0.752 | 0.055 |
| hypoxia_3wks | 1.172 | 0.355 |
| hypoxia_6wks | 1.157 | -0.073 |
| glycerol | 0.607 | 0.543 |
| cholesterol | 0.665 | 0.351 |
| AJ | -0.472 | 0.193 |
| Bibs02 | -0.898 | 0.266 |
| Bibs02c | 0.762 | 0.244 |
| BL6 | -1.212 | -1.269 |
| BL6a | 0.924 | -0.208 |
| BXD01 | -2.722 | -0.51 |
| BXD010 | 0.0 | -0.452 |
| BXD011 | -1.306 | -0.809 |
| BXD03 | -0.664 | -1.026 |
| BXD04 | -1.965 | -0.185 |
| BXD05 | -2.354 | -0.94 |
| BXD06 | -2.056 | -0.623 |
| BXD07 | -2.686 | -0.631 |
| BXD08 | -0.219 | -0.546 |
| BXD09 | -1.81 | -0.875 |
| CAST | -0.829 | 0.355 |
| CCcont | -1.575 | -1.043 |
| DS01 | 2.933 | 0.406 |
| DS02 | 3.266 | 0.323 |
| DS04 | 0.294 | 0.254 |
| DS0c | 1.241 | 0.239 |
| GP01 | -2.063 | -0.677 |
| GP02 | -1.967 | -0.479 |
| GP0c | -0.942 | -0.968 |
| NOD | -1.064 | 2.034 |
| NZO | -0.134 | -0.061 |
| PWK | -1.337 | -0.142 |
| H37Rv_KO_CtpC | -1.975 | -0.367 |
| H37Rv_KO_CtpD | 0.978 | 0.28 |
| H37Rv_KO_Rv1272 | -3.334 | -0.579 |
| H37Rv_KO_SugABC | -1.624 | -0.332 |
| H37Rv_KO_MbtN | -2.154 | -1.221 |
| Trans05 | -2.629 | -0.327 |
| macrophage_unactivated | 0.082 | -0.3 |
| IL1 | -0.685 | -0.478 |
| Rapamycin | 0.611 | -0.046 |
| Tcell | 0.254 | -0.723 |
| GMCSF | -1.238 | -0.082 |
| IFNab | -0.892 | 0.136 |
| IFNg | 2.812 | 0.198 |
| IFNg_GMCSF1 | -0.349 | 0.302 |
| Rv1432_day32 | 1.447 | 0.527 |
| Rv1565c_day32 | 0.218 | 0.903 |
| secA2_input | -0.955 | 0.131 |
| delta_Rv3594 | -0.176 | 0.234 |
| delta_Rv3717 | -2.766 | -0.122 |
| delta_Rv3811 | 0.995 | 0.181 |
| delta_Rv0954 | -3.489 | -0.154 |
| PonA1 | -0.437 | 0.538 |
| EccD1_KO | 2.46 | 0.898 |
| EspI_KO | 1.777 | 1.021 |
| PE35_KO | 1.978 | 0.0 |
| PPE68_KO | 1.683 | 0.022 |
| glycerol2 | -0.694 | 0.242 |
| lignocerate | -1.275 | -0.578 |
| oleate | 0.32 | 0.302 |
| phosphatidylcholine | -0.989 | -0.025 |
| acetate | -0.795 | -0.698 |
| glucAc | -2.449 | -0.713 |
| Rv0950ko | 0.793 | 0.16 |
| Rv1096ko | 1.954 | -0.081 |
| Rv3684ko | 1.647 | -0.226 |
| delta_otsA_trehalose | -0.328 | 0.692 |