Top 10 genes with highest correlation to Rv3129/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1653/argJ | (cc=0.5054) | info on Rv1653/argJ |
| Rv2761c/hsdS | (cc=0.4722) | info on Rv2761c/hsdS |
| Rv0265c/- | (cc=0.4607) | info on Rv0265c/- |
| Rv0840c/pip | (cc=0.4562) | info on Rv0840c/pip |
| Rv1708/- | (cc=0.4551) | info on Rv1708/- |
| Rv1453/- | (cc=0.4486) | info on Rv1453/- |
| Rv1140/- | (cc=0.4477) | info on Rv1140/- |
| Rv0233/nrdB | (cc=0.4435) | info on Rv0233/nrdB |
| Rv3591c/- | (cc=0.4423) | info on Rv3591c/- |
| Rv2725c/hflX | (cc=0.4329) | info on Rv2725c/hflX |
Correlation of Rv3129/- with Rv1653/argJ
Normalized LFCs for Rv3129/-:
(description and provenance of datasets)
| Rv3129/- | Rv1653/argJ | |
| Fe_supp_jason_reseq | 0.144 | 1.501 |
| low_pH_jason_reseq | -0.162 | 0.303 |
| NO_jason_reseq | 0.0 | -0.845 |
| B6_jason_reseq | 0.925 | 4.098 |
| MHCII_jason_reseq | 2.625 | 3.346 |
| Isoniazid02 | 4.243 | -0.749 |
| Rifampicin4 | -1.427 | -2.978 |
| Ethambutol3 | -0.882 | -1.103 |
| Meropenem3 | -4.097 | -1.899 |
| Vancomycin16 | -1.425 | 0.247 |
| Rv2680_day32 | 1.627 | -0.27 |
| H37Rv_KO_MarP | -0.752 | 1.552 |
| hypoxia_3wks | 1.172 | -0.55 |
| hypoxia_6wks | 1.157 | 1.645 |
| glycerol | 0.607 | 2.687 |
| cholesterol | 0.665 | 1.022 |
| AJ | -0.472 | 0.086 |
| Bibs02 | -0.898 | -0.898 |
| Bibs02c | 0.762 | 0.326 |
| BL6 | -1.212 | -0.652 |
| BL6a | 0.924 | 0.686 |
| BXD01 | -2.722 | -1.793 |
| BXD010 | 0.0 | -2.061 |
| BXD011 | -1.306 | -1.439 |
| BXD03 | -0.664 | -2.064 |
| BXD04 | -1.965 | -0.85 |
| BXD05 | -2.354 | -0.277 |
| BXD06 | -2.056 | -0.967 |
| BXD07 | -2.686 | -1.288 |
| BXD08 | -0.219 | -1.431 |
| BXD09 | -1.81 | -1.372 |
| CAST | -0.829 | 0.918 |
| CCcont | -1.575 | -1.686 |
| DS01 | 2.933 | 1.116 |
| DS02 | 3.266 | 1.656 |
| DS04 | 0.294 | 0.592 |
| DS0c | 1.241 | -0.878 |
| GP01 | -2.063 | -1.589 |
| GP02 | -1.967 | -1.498 |
| GP0c | -0.942 | -1.542 |
| NOD | -1.064 | -0.361 |
| NZO | -0.134 | -1.04 |
| PWK | -1.337 | -1.348 |
| H37Rv_KO_CtpC | -1.975 | -2.924 |
| H37Rv_KO_CtpD | 0.978 | -1.933 |
| H37Rv_KO_Rv1272 | -3.334 | -2.539 |
| H37Rv_KO_SugABC | -1.624 | -1.594 |
| H37Rv_KO_MbtN | -2.154 | -0.747 |
| Trans05 | -2.629 | -2.352 |
| macrophage_unactivated | 0.082 | 1.774 |
| IL1 | -0.685 | 1.528 |
| Rapamycin | 0.611 | 0.592 |
| Tcell | 0.254 | 0.427 |
| GMCSF | -1.238 | 0.09 |
| IFNab | -0.892 | -0.435 |
| IFNg | 2.812 | 0.516 |
| IFNg_GMCSF1 | -0.349 | 0.792 |
| Rv1432_day32 | 1.447 | 0.0 |
| Rv1565c_day32 | 0.218 | 0.0 |
| secA2_input | -0.955 | -0.87 |
| delta_Rv3594 | -0.176 | -0.193 |
| delta_Rv3717 | -2.766 | 0.405 |
| delta_Rv3811 | 0.995 | 0.0 |
| delta_Rv0954 | -3.489 | 0.353 |
| PonA1 | -0.437 | -0.898 |
| EccD1_KO | 2.46 | 3.032 |
| EspI_KO | 1.777 | 0.211 |
| PE35_KO | 1.978 | 1.631 |
| PPE68_KO | 1.683 | 1.449 |
| glycerol2 | -0.694 | 0.0 |
| lignocerate | -1.275 | 0.591 |
| oleate | 0.32 | 0.0 |
| phosphatidylcholine | -0.989 | 0.0 |
| acetate | -0.795 | 0.63 |
| glucAc | -2.449 | 0.701 |
| Rv0950ko | 0.793 | -1.462 |
| Rv1096ko | 1.954 | 1.405 |
| Rv3684ko | 1.647 | -0.999 |
| delta_otsA_trehalose | -0.328 | -2.029 |