Top 10 genes with highest correlation to Rv3090/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1159A/- | (cc=0.4959) | info on Rv1159A/- |
| Rv2468A/- | (cc=0.4522) | info on Rv2468A/- |
| Rv2274c/mazF8 | (cc=0.4188) | info on Rv2274c/mazF8 |
| Rv0531/- | (cc=0.3932) | info on Rv0531/- |
| Rv2865/relF | (cc=0.371) | info on Rv2865/relF |
| Rv1088/PE9 | (cc=0.3666) | info on Rv1088/PE9 |
| Rv3518c/cyp142 | (cc=0.3617) | info on Rv3518c/cyp142 |
| Rv3588c/canB | (cc=0.3604) | info on Rv3588c/canB |
| Rv3764c/tcrY | (cc=0.3588) | info on Rv3764c/tcrY |
| Rv3843c/- | (cc=0.3551) | info on Rv3843c/- |
Correlation of Rv3090/- with Rv2865/relF
Normalized LFCs for Rv3090/-:
(description and provenance of datasets)
| Rv3090/- | Rv2865/relF | |
| Fe_supp_jason_reseq | 0.156 | 0.036 |
| low_pH_jason_reseq | -0.412 | -0.353 |
| NO_jason_reseq | -0.039 | 0.641 |
| B6_jason_reseq | 1.177 | -0.052 |
| MHCII_jason_reseq | -0.036 | -0.012 |
| Isoniazid02 | -0.623 | -3.936 |
| Rifampicin4 | 0.014 | 0.56 |
| Ethambutol3 | -0.536 | -3.694 |
| Meropenem3 | -0.831 | -3.71 |
| Vancomycin16 | -0.268 | -1.157 |
| Rv2680_day32 | 0.415 | 1.134 |
| H37Rv_KO_MarP | 1.149 | 0.697 |
| hypoxia_3wks | 0.124 | 0.14 |
| hypoxia_6wks | -0.449 | 0.347 |
| glycerol | 0.351 | -1.521 |
| cholesterol | 0.134 | -1.07 |
| AJ | 0.171 | -1.714 |
| Bibs02 | -0.146 | -2.649 |
| Bibs02c | 0.418 | -0.477 |
| BL6 | -0.294 | 1.273 |
| BL6a | 0.727 | 0.948 |
| BXD01 | 0.683 | -0.442 |
| BXD010 | 0.711 | 1.873 |
| BXD011 | 0.205 | 1.22 |
| BXD03 | 1.445 | 0.245 |
| BXD04 | 0.049 | 0.842 |
| BXD05 | 1.162 | 1.027 |
| BXD06 | 0.226 | 0.201 |
| BXD07 | 0.442 | 0.843 |
| BXD08 | 0.564 | -0.048 |
| BXD09 | 0.31 | 1.067 |
| CAST | -0.097 | -0.185 |
| CCcont | -0.031 | 0.633 |
| DS01 | -0.378 | -0.645 |
| DS02 | -0.61 | -1.801 |
| DS04 | 0.396 | -1.97 |
| DS0c | -0.969 | -0.11 |
| GP01 | -1.43 | -0.065 |
| GP02 | 0.457 | -1.016 |
| GP0c | 0.115 | 0.332 |
| NOD | 0.841 | 1.91 |
| NZO | 0.623 | -0.146 |
| PWK | 0.04 | -0.571 |
| H37Rv_KO_CtpC | 0.008 | 0.285 |
| H37Rv_KO_CtpD | 0.1 | 0.33 |
| H37Rv_KO_Rv1272 | -0.097 | 0.288 |
| H37Rv_KO_SugABC | 0.005 | 1.604 |
| H37Rv_KO_MbtN | -0.617 | 1.113 |
| Trans05 | 0.0 | 0.942 |
| macrophage_unactivated | -0.095 | -1.335 |
| IL1 | 0.851 | 0.756 |
| Rapamycin | -0.242 | -0.114 |
| Tcell | 0.075 | 0.274 |
| GMCSF | -0.174 | 0.084 |
| IFNab | 0.505 | -0.544 |
| IFNg | -0.211 | 0.823 |
| IFNg_GMCSF1 | 0.057 | 0.374 |
| Rv1432_day32 | -0.169 | -0.164 |
| Rv1565c_day32 | 1.256 | 0.0 |
| secA2_input | -0.487 | 0.163 |
| delta_Rv3594 | 0.064 | 4.483 |
| delta_Rv3717 | 0.4 | 4.268 |
| delta_Rv3811 | 0.354 | 4.653 |
| delta_Rv0954 | 0.756 | 4.184 |
| PonA1 | 0.464 | 3.704 |
| EccD1_KO | 0.5 | 1.506 |
| EspI_KO | -0.299 | 0.445 |
| PE35_KO | -0.385 | 0.604 |
| PPE68_KO | -0.25 | -0.39 |
| glycerol2 | 0.098 | -0.909 |
| lignocerate | 0.414 | -0.47 |
| oleate | -0.198 | -0.756 |
| phosphatidylcholine | 0.436 | -0.65 |
| acetate | 0.577 | 0.063 |
| glucAc | 0.45 | -1.127 |
| Rv0950ko | -0.778 | -1.058 |
| Rv1096ko | -0.564 | -1.52 |
| Rv3684ko | -1.972 | -1.831 |
| delta_otsA_trehalose | 0.39 | 1.719 |