Top 10 genes with highest correlation to Rv3090/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1159A/- | (cc=0.4959) | info on Rv1159A/- |
| Rv2468A/- | (cc=0.4522) | info on Rv2468A/- |
| Rv2274c/mazF8 | (cc=0.4188) | info on Rv2274c/mazF8 |
| Rv0531/- | (cc=0.3932) | info on Rv0531/- |
| Rv2865/relF | (cc=0.371) | info on Rv2865/relF |
| Rv1088/PE9 | (cc=0.3666) | info on Rv1088/PE9 |
| Rv3518c/cyp142 | (cc=0.3617) | info on Rv3518c/cyp142 |
| Rv3588c/canB | (cc=0.3604) | info on Rv3588c/canB |
| Rv3764c/tcrY | (cc=0.3588) | info on Rv3764c/tcrY |
| Rv3843c/- | (cc=0.3551) | info on Rv3843c/- |
Correlation of Rv3090/- with Rv2468A/-
Normalized LFCs for Rv3090/-:
(description and provenance of datasets)
| Rv3090/- | Rv2468A/- | |
| Fe_supp_jason_reseq | 0.156 | -0.901 |
| low_pH_jason_reseq | -0.412 | 0.174 |
| NO_jason_reseq | -0.039 | -0.155 |
| B6_jason_reseq | 1.177 | 0.685 |
| MHCII_jason_reseq | -0.036 | -1.287 |
| Isoniazid02 | -0.623 | -0.874 |
| Rifampicin4 | 0.014 | -1.235 |
| Ethambutol3 | -0.536 | -0.27 |
| Meropenem3 | -0.831 | 0.044 |
| Vancomycin16 | -0.268 | -0.509 |
| Rv2680_day32 | 0.415 | 0.256 |
| H37Rv_KO_MarP | 1.149 | -0.298 |
| hypoxia_3wks | 0.124 | -0.419 |
| hypoxia_6wks | -0.449 | -0.754 |
| glycerol | 0.351 | 0.391 |
| cholesterol | 0.134 | -0.274 |
| AJ | 0.171 | -0.605 |
| Bibs02 | -0.146 | -0.193 |
| Bibs02c | 0.418 | 0.467 |
| BL6 | -0.294 | 0.736 |
| BL6a | 0.727 | 0.222 |
| BXD01 | 0.683 | -0.123 |
| BXD010 | 0.711 | 0.942 |
| BXD011 | 0.205 | 0.045 |
| BXD03 | 1.445 | -0.193 |
| BXD04 | 0.049 | -1.429 |
| BXD05 | 1.162 | 0.19 |
| BXD06 | 0.226 | -0.158 |
| BXD07 | 0.442 | 1.439 |
| BXD08 | 0.564 | 0.225 |
| BXD09 | 0.31 | 0.069 |
| CAST | -0.097 | 0.073 |
| CCcont | -0.031 | -0.188 |
| DS01 | -0.378 | -0.488 |
| DS02 | -0.61 | 0.244 |
| DS04 | 0.396 | -0.587 |
| DS0c | -0.969 | -0.031 |
| GP01 | -1.43 | -1.793 |
| GP02 | 0.457 | 0.359 |
| GP0c | 0.115 | -0.097 |
| NOD | 0.841 | -0.724 |
| NZO | 0.623 | -0.051 |
| PWK | 0.04 | 0.499 |
| H37Rv_KO_CtpC | 0.008 | -0.245 |
| H37Rv_KO_CtpD | 0.1 | 0.582 |
| H37Rv_KO_Rv1272 | -0.097 | 0.902 |
| H37Rv_KO_SugABC | 0.005 | -0.074 |
| H37Rv_KO_MbtN | -0.617 | -1.611 |
| Trans05 | 0.0 | 0.459 |
| macrophage_unactivated | -0.095 | -0.11 |
| IL1 | 0.851 | 1.548 |
| Rapamycin | -0.242 | -0.629 |
| Tcell | 0.075 | 1.052 |
| GMCSF | -0.174 | -0.647 |
| IFNab | 0.505 | -0.62 |
| IFNg | -0.211 | 0.0 |
| IFNg_GMCSF1 | 0.057 | 0.93 |
| Rv1432_day32 | -0.169 | -0.754 |
| Rv1565c_day32 | 1.256 | 0.218 |
| secA2_input | -0.487 | 1.583 |
| delta_Rv3594 | 0.064 | -0.549 |
| delta_Rv3717 | 0.4 | 0.312 |
| delta_Rv3811 | 0.354 | -1.164 |
| delta_Rv0954 | 0.756 | 1.492 |
| PonA1 | 0.464 | 0.83 |
| EccD1_KO | 0.5 | 1.526 |
| EspI_KO | -0.299 | -0.556 |
| PE35_KO | -0.385 | -1.598 |
| PPE68_KO | -0.25 | -1.421 |
| glycerol2 | 0.098 | -0.766 |
| lignocerate | 0.414 | 0.475 |
| oleate | -0.198 | -1.947 |
| phosphatidylcholine | 0.436 | -0.291 |
| acetate | 0.577 | 0.959 |
| glucAc | 0.45 | 1.279 |
| Rv0950ko | -0.778 | -0.47 |
| Rv1096ko | -0.564 | -1.408 |
| Rv3684ko | -1.972 | -1.949 |
| delta_otsA_trehalose | 0.39 | 2.196 |