TnSeqCorr

Top 10 genes with highest correlation to Rv2904c/rplS:

update plotcorrelationlink to info on gene
Rv2965c/kdtB (cc=0.6413) info on Rv2965c/kdtB
Rv2603c/- (cc=0.6369) info on Rv2603c/-
Rv0651/rplJ (cc=0.6333) info on Rv0651/rplJ
Rv1636/TB15.3 (cc=0.6254) info on Rv1636/TB15.3
Rv2135c/- (cc=0.6217) info on Rv2135c/-
Rv0736/rslA (cc=0.5603) info on Rv0736/rslA
Rv1457c/- (cc=0.5588) info on Rv1457c/-
Rv3245c/mtrB (cc=0.5418) info on Rv3245c/mtrB
Rv1275/lprC (cc=0.4768) info on Rv1275/lprC
Rv2358/smtB (cc=0.4717) info on Rv2358/smtB

Correlation of Rv2904c/rplS with Rv3245c/mtrB

Normalized LFCs for Rv2904c/rplS:
(description and provenance of datasets)
Rv2904c/rplSRv3245c/mtrB
Fe_supp_jason_reseq

2.262

0.218

low_pH_jason_reseq

0.0

0.0

NO_jason_reseq

0.69

0.0

B6_jason_reseq

0.0

0.0

MHCII_jason_reseq

0.0

0.0

Isoniazid02

-0.201

0.0

Rifampicin4

0.341

0.0

Ethambutol3

1.44

0.0

Meropenem3

-0.165

0.0

Vancomycin16

0.0

0.0

Rv2680_day32

0.0

0.0

H37Rv_KO_MarP

-0.586

-0.371

hypoxia_3wks

0.0

0.0

hypoxia_6wks

0.0

0.0

glycerol

0.0

0.0

cholesterol

0.0

0.0

AJ

0.0

0.0

Bibs02

0.0

0.0

Bibs02c

0.0

0.0

BL6

0.0

0.0

BL6a

0.0

0.0

BXD01

0.0

0.0

BXD010

0.0

0.0

BXD011

0.0

0.0

BXD03

0.0

0.0

BXD04

0.0

0.0

BXD05

0.0

0.0

BXD06

0.0

0.0

BXD07

0.0

0.0

BXD08

0.0

0.0

BXD09

0.0

0.0

CAST

0.0

0.0

CCcont

1.082

0.0

DS01

0.0

0.0

DS02

0.0

0.0

DS04

0.194

0.0

DS0c

0.0

0.0

GP01

0.0

0.0

GP02

0.0

0.0

GP0c

0.0

0.0

NOD

0.0

0.0

NZO

0.0

0.0

PWK

0.0

0.0

H37Rv_KO_CtpC

0.162

0.0

H37Rv_KO_CtpD

0.127

0.0

H37Rv_KO_Rv1272

0.0

0.0

H37Rv_KO_SugABC

0.099

0.0

H37Rv_KO_MbtN

0.196

0.0

Trans05

0.0

0.0

macrophage_unactivated

0.0

0.0

IL1

-0.409

0.0

Rapamycin

-0.424

0.0

Tcell

-0.45

0.0

GMCSF

0.0

0.0

IFNab

0.0

0.0

IFNg

-0.369

0.0

IFNg_GMCSF1

-0.434

0.0

Rv1432_day32

0.0

0.0

Rv1565c_day32

0.0

0.0

secA2_input

3.389

1.65

delta_Rv3594

-0.459

0.0

delta_Rv3717

-0.243

0.0

delta_Rv3811

-0.617

0.0

delta_Rv0954

0.22

0.0

PonA1

-0.346

0.0

EccD1_KO

0.954

0.0

EspI_KO

0.433

0.0

PE35_KO

-0.767

1.105

PPE68_KO

1.133

0.841

glycerol2

0.0

0.0

lignocerate

0.0

0.0

oleate

0.0

0.0

phosphatidylcholine

0.0

0.0

acetate

0.0

0.0

glucAc

0.0

0.0

Rv0950ko

0.874

0.0

Rv1096ko

-0.697

0.0

Rv3684ko

0.337

0.452

delta_otsA_trehalose

0.654

0.0