Top 10 genes with highest correlation to Rv2620c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1405c/- | (cc=0.6827) | info on Rv1405c/- |
| Rv1589/bioB | (cc=0.6438) | info on Rv1589/bioB |
| Rv3616c/espA | (cc=0.6272) | info on Rv3616c/espA |
| Rv1493/mutB | (cc=0.6004) | info on Rv1493/mutB |
| Rv1568/bioA | (cc=0.5929) | info on Rv1568/bioA |
| Rv0485/- | (cc=0.5925) | info on Rv0485/- |
| Rv1065/- | (cc=0.5829) | info on Rv1065/- |
| Rv1235/lpqY | (cc=0.5828) | info on Rv1235/lpqY |
| Rv1590/- | (cc=0.5792) | info on Rv1590/- |
| Rv2605c/tesB2 | (cc=0.5747) | info on Rv2605c/tesB2 |
Correlation of Rv2620c/- with Rv3616c/espA
Normalized LFCs for Rv2620c/-:
(description and provenance of datasets)
| Rv2620c/- | Rv3616c/espA | |
| Fe_supp_jason_reseq | 1.026 | 0.087 |
| low_pH_jason_reseq | -1.017 | -0.775 |
| NO_jason_reseq | -2.268 | -1.278 |
| B6_jason_reseq | -0.493 | -3.09 |
| MHCII_jason_reseq | -0.611 | -2.722 |
| Isoniazid02 | 0.738 | 0.476 |
| Rifampicin4 | 0.192 | 0.241 |
| Ethambutol3 | 0.524 | -0.018 |
| Meropenem3 | 0.879 | 0.789 |
| Vancomycin16 | 0.329 | -0.18 |
| Rv2680_day32 | -0.886 | -1.717 |
| H37Rv_KO_MarP | -0.329 | 0.381 |
| hypoxia_3wks | 0.259 | 0.024 |
| hypoxia_6wks | -0.061 | -0.098 |
| glycerol | -0.979 | -1.435 |
| cholesterol | -0.344 | -1.373 |
| AJ | -0.966 | -4.551 |
| Bibs02 | -0.215 | -4.346 |
| Bibs02c | -0.715 | -4.142 |
| BL6 | -0.171 | -3.453 |
| BL6a | -0.189 | -4.605 |
| BXD01 | -0.824 | -3.648 |
| BXD010 | -0.748 | -2.883 |
| BXD011 | -0.689 | -2.961 |
| BXD03 | -0.704 | -3.143 |
| BXD04 | 0.495 | -3.155 |
| BXD05 | -0.605 | -2.17 |
| BXD06 | -0.402 | -3.908 |
| BXD07 | -0.507 | -3.771 |
| BXD08 | -1.413 | -3.672 |
| BXD09 | -0.396 | -4.181 |
| CAST | -2.611 | -5.474 |
| CCcont | 0.661 | -1.136 |
| DS01 | -1.862 | -6.0 |
| DS02 | -1.905 | -5.764 |
| DS04 | -0.384 | -3.671 |
| DS0c | -1.815 | -5.466 |
| GP01 | 0.175 | -3.404 |
| GP02 | 1.757 | -2.752 |
| GP0c | 0.157 | -1.597 |
| NOD | -2.88 | -1.995 |
| NZO | -0.92 | -5.358 |
| PWK | -1.651 | -5.836 |
| H37Rv_KO_CtpC | -0.787 | -2.684 |
| H37Rv_KO_CtpD | -0.433 | -2.791 |
| H37Rv_KO_Rv1272 | 0.264 | -1.864 |
| H37Rv_KO_SugABC | -1.414 | -1.092 |
| H37Rv_KO_MbtN | -1.048 | 0.118 |
| Trans05 | -0.224 | -1.933 |
| macrophage_unactivated | 0.085 | -0.079 |
| IL1 | 0.848 | 1.35 |
| Rapamycin | 0.675 | -0.037 |
| Tcell | 0.326 | -0.841 |
| GMCSF | 1.626 | 2.094 |
| IFNab | 0.463 | 1.321 |
| IFNg | 0.927 | -1.109 |
| IFNg_GMCSF1 | 0.393 | -0.628 |
| Rv1432_day32 | -1.97 | -2.926 |
| Rv1565c_day32 | -1.617 | -3.852 |
| secA2_input | 0.502 | -0.211 |
| delta_Rv3594 | -0.48 | 0.101 |
| delta_Rv3717 | -0.841 | -0.448 |
| delta_Rv3811 | -1.016 | -0.094 |
| delta_Rv0954 | -0.359 | -1.009 |
| PonA1 | -1.353 | -1.103 |
| EccD1_KO | 0.75 | 0.135 |
| EspI_KO | 0.436 | 0.342 |
| PE35_KO | 0.295 | -0.502 |
| PPE68_KO | 0.045 | -0.618 |
| glycerol2 | 0.979 | 2.046 |
| lignocerate | 1.218 | 0.645 |
| oleate | 0.873 | 0.305 |
| phosphatidylcholine | 1.326 | 1.689 |
| acetate | 0.462 | -0.362 |
| glucAc | 0.973 | -0.715 |
| Rv0950ko | 0.549 | 0.326 |
| Rv1096ko | 0.621 | -0.199 |
| Rv3684ko | -0.285 | 0.174 |
| delta_otsA_trehalose | -0.087 | -0.88 |