Top 10 genes with highest correlation to Rv2620c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1405c/- | (cc=0.6827) | info on Rv1405c/- |
| Rv1589/bioB | (cc=0.6438) | info on Rv1589/bioB |
| Rv3616c/espA | (cc=0.6272) | info on Rv3616c/espA |
| Rv1493/mutB | (cc=0.6004) | info on Rv1493/mutB |
| Rv1568/bioA | (cc=0.5929) | info on Rv1568/bioA |
| Rv0485/- | (cc=0.5925) | info on Rv0485/- |
| Rv1065/- | (cc=0.5829) | info on Rv1065/- |
| Rv1235/lpqY | (cc=0.5828) | info on Rv1235/lpqY |
| Rv1590/- | (cc=0.5792) | info on Rv1590/- |
| Rv2605c/tesB2 | (cc=0.5747) | info on Rv2605c/tesB2 |
Correlation of Rv2620c/- with Rv1493/mutB
Normalized LFCs for Rv2620c/-:
(description and provenance of datasets)
| Rv2620c/- | Rv1493/mutB | |
| Fe_supp_jason_reseq | 1.026 | 0.581 |
| low_pH_jason_reseq | -1.017 | -0.313 |
| NO_jason_reseq | -2.268 | -0.764 |
| B6_jason_reseq | -0.493 | -2.724 |
| MHCII_jason_reseq | -0.611 | -0.977 |
| Isoniazid02 | 0.738 | 1.15 |
| Rifampicin4 | 0.192 | 0.1 |
| Ethambutol3 | 0.524 | -0.046 |
| Meropenem3 | 0.879 | 0.785 |
| Vancomycin16 | 0.329 | 0.239 |
| Rv2680_day32 | -0.886 | -0.936 |
| H37Rv_KO_MarP | -0.329 | 0.277 |
| hypoxia_3wks | 0.259 | -0.251 |
| hypoxia_6wks | -0.061 | -0.363 |
| glycerol | -0.979 | -0.332 |
| cholesterol | -0.344 | -0.295 |
| AJ | -0.966 | -1.839 |
| Bibs02 | -0.215 | -0.591 |
| Bibs02c | -0.715 | -0.565 |
| BL6 | -0.171 | -1.356 |
| BL6a | -0.189 | -1.333 |
| BXD01 | -0.824 | -1.274 |
| BXD010 | -0.748 | -0.335 |
| BXD011 | -0.689 | -0.569 |
| BXD03 | -0.704 | -1.13 |
| BXD04 | 0.495 | -0.771 |
| BXD05 | -0.605 | -0.906 |
| BXD06 | -0.402 | -0.95 |
| BXD07 | -0.507 | -0.897 |
| BXD08 | -1.413 | -1.093 |
| BXD09 | -0.396 | -1.195 |
| CAST | -2.611 | -1.925 |
| CCcont | 0.661 | -0.317 |
| DS01 | -1.862 | -1.839 |
| DS02 | -1.905 | -3.239 |
| DS04 | -0.384 | -2.067 |
| DS0c | -1.815 | -1.431 |
| GP01 | 0.175 | 0.274 |
| GP02 | 1.757 | -0.671 |
| GP0c | 0.157 | -0.008 |
| NOD | -2.88 | -0.317 |
| NZO | -0.92 | -1.244 |
| PWK | -1.651 | -1.154 |
| H37Rv_KO_CtpC | -0.787 | -1.243 |
| H37Rv_KO_CtpD | -0.433 | 0.216 |
| H37Rv_KO_Rv1272 | 0.264 | -0.047 |
| H37Rv_KO_SugABC | -1.414 | -0.903 |
| H37Rv_KO_MbtN | -1.048 | -1.563 |
| Trans05 | -0.224 | -0.982 |
| macrophage_unactivated | 0.085 | 0.442 |
| IL1 | 0.848 | 0.507 |
| Rapamycin | 0.675 | 0.617 |
| Tcell | 0.326 | -0.029 |
| GMCSF | 1.626 | 0.243 |
| IFNab | 0.463 | 0.423 |
| IFNg | 0.927 | 0.518 |
| IFNg_GMCSF1 | 0.393 | 0.537 |
| Rv1432_day32 | -1.97 | 0.027 |
| Rv1565c_day32 | -1.617 | -0.897 |
| secA2_input | 0.502 | 0.149 |
| delta_Rv3594 | -0.48 | 0.0 |
| delta_Rv3717 | -0.841 | -0.238 |
| delta_Rv3811 | -1.016 | -0.1 |
| delta_Rv0954 | -0.359 | 0.359 |
| PonA1 | -1.353 | -0.412 |
| EccD1_KO | 0.75 | 0.793 |
| EspI_KO | 0.436 | 0.619 |
| PE35_KO | 0.295 | 0.75 |
| PPE68_KO | 0.045 | 0.694 |
| glycerol2 | 0.979 | -0.017 |
| lignocerate | 1.218 | 0.202 |
| oleate | 0.873 | 0.065 |
| phosphatidylcholine | 1.326 | 0.246 |
| acetate | 0.462 | 0.095 |
| glucAc | 0.973 | 0.172 |
| Rv0950ko | 0.549 | 0.109 |
| Rv1096ko | 0.621 | -0.464 |
| Rv3684ko | -0.285 | -0.121 |
| delta_otsA_trehalose | -0.087 | 0.198 |