Top 10 genes with highest correlation to Rv2620c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1405c/- | (cc=0.6827) | info on Rv1405c/- |
| Rv1589/bioB | (cc=0.6438) | info on Rv1589/bioB |
| Rv3616c/espA | (cc=0.6272) | info on Rv3616c/espA |
| Rv1493/mutB | (cc=0.6004) | info on Rv1493/mutB |
| Rv1568/bioA | (cc=0.5929) | info on Rv1568/bioA |
| Rv0485/- | (cc=0.5925) | info on Rv0485/- |
| Rv1065/- | (cc=0.5829) | info on Rv1065/- |
| Rv1235/lpqY | (cc=0.5828) | info on Rv1235/lpqY |
| Rv1590/- | (cc=0.5792) | info on Rv1590/- |
| Rv2605c/tesB2 | (cc=0.5747) | info on Rv2605c/tesB2 |
Correlation of Rv2620c/- with Rv1590/-
Normalized LFCs for Rv2620c/-:
(description and provenance of datasets)
| Rv2620c/- | Rv1590/- | |
| Fe_supp_jason_reseq | 1.026 | 1.809 |
| low_pH_jason_reseq | -1.017 | -2.058 |
| NO_jason_reseq | -2.268 | -0.391 |
| B6_jason_reseq | -0.493 | -5.114 |
| MHCII_jason_reseq | -0.611 | -4.029 |
| Isoniazid02 | 0.738 | -0.288 |
| Rifampicin4 | 0.192 | -0.273 |
| Ethambutol3 | 0.524 | 0.114 |
| Meropenem3 | 0.879 | 0.156 |
| Vancomycin16 | 0.329 | 0.462 |
| Rv2680_day32 | -0.886 | -4.076 |
| H37Rv_KO_MarP | -0.329 | -0.391 |
| hypoxia_3wks | 0.259 | 0.598 |
| hypoxia_6wks | -0.061 | -0.18 |
| glycerol | -0.979 | -6.0 |
| cholesterol | -0.344 | -4.706 |
| AJ | -0.966 | -6.0 |
| Bibs02 | -0.215 | -5.941 |
| Bibs02c | -0.715 | -6.0 |
| BL6 | -0.171 | -3.094 |
| BL6a | -0.189 | -5.463 |
| BXD01 | -0.824 | -3.774 |
| BXD010 | -0.748 | -4.161 |
| BXD011 | -0.689 | -3.691 |
| BXD03 | -0.704 | -4.393 |
| BXD04 | 0.495 | -4.018 |
| BXD05 | -0.605 | -3.329 |
| BXD06 | -0.402 | -4.337 |
| BXD07 | -0.507 | -4.499 |
| BXD08 | -1.413 | -4.321 |
| BXD09 | -0.396 | -4.566 |
| CAST | -2.611 | -5.586 |
| CCcont | 0.661 | 0.202 |
| DS01 | -1.862 | -6.0 |
| DS02 | -1.905 | -6.0 |
| DS04 | -0.384 | -3.596 |
| DS0c | -1.815 | -6.0 |
| GP01 | 0.175 | -2.937 |
| GP02 | 1.757 | -2.475 |
| GP0c | 0.157 | -1.317 |
| NOD | -2.88 | -4.357 |
| NZO | -0.92 | -6.0 |
| PWK | -1.651 | -5.836 |
| H37Rv_KO_CtpC | -0.787 | -4.101 |
| H37Rv_KO_CtpD | -0.433 | -1.658 |
| H37Rv_KO_Rv1272 | 0.264 | -4.196 |
| H37Rv_KO_SugABC | -1.414 | -1.708 |
| H37Rv_KO_MbtN | -1.048 | 0.152 |
| Trans05 | -0.224 | -3.603 |
| macrophage_unactivated | 0.085 | 0.145 |
| IL1 | 0.848 | -0.442 |
| Rapamycin | 0.675 | 2.243 |
| Tcell | 0.326 | 0.241 |
| GMCSF | 1.626 | 0.723 |
| IFNab | 0.463 | 1.36 |
| IFNg | 0.927 | -0.657 |
| IFNg_GMCSF1 | 0.393 | -2.209 |
| Rv1432_day32 | -1.97 | -6.0 |
| Rv1565c_day32 | -1.617 | -6.0 |
| secA2_input | 0.502 | -0.088 |
| delta_Rv3594 | -0.48 | 1.781 |
| delta_Rv3717 | -0.841 | 1.747 |
| delta_Rv3811 | -1.016 | 0.921 |
| delta_Rv0954 | -0.359 | 0.376 |
| PonA1 | -1.353 | 1.032 |
| EccD1_KO | 0.75 | -1.312 |
| EspI_KO | 0.436 | -0.556 |
| PE35_KO | 0.295 | -0.621 |
| PPE68_KO | 0.045 | -1.145 |
| glycerol2 | 0.979 | 0.0 |
| lignocerate | 1.218 | 0.168 |
| oleate | 0.873 | 0.0 |
| phosphatidylcholine | 1.326 | 0.0 |
| acetate | 0.462 | 0.0 |
| glucAc | 0.973 | 1.034 |
| Rv0950ko | 0.549 | -0.651 |
| Rv1096ko | 0.621 | 1.113 |
| Rv3684ko | -0.285 | -0.17 |
| delta_otsA_trehalose | -0.087 | 1.762 |