Top 10 genes with highest correlation to Rv2546/vapC18:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3577/- | (cc=0.5312) | info on Rv3577/- |
| Rv0551c/fadD8 | (cc=0.5171) | info on Rv0551c/fadD8 |
| Rv2489c/- | (cc=0.4523) | info on Rv2489c/- |
| Rv1735c/- | (cc=0.4484) | info on Rv1735c/- |
| Rv2615c/PE_PGRS45 | (cc=0.4326) | info on Rv2615c/PE_PGRS45 |
| Rv2994/- | (cc=0.4294) | info on Rv2994/- |
| Rv1765c/- | (cc=0.4288) | info on Rv1765c/- |
| Rv2407/- | (cc=0.4272) | info on Rv2407/- |
| Rv2285/- | (cc=0.4259) | info on Rv2285/- |
| Rv2701c/suhB | (cc=0.4209) | info on Rv2701c/suhB |
Correlation of Rv2546/vapC18 with Rv2615c/PE_PGRS45
Normalized LFCs for Rv2546/vapC18:
(description and provenance of datasets)
| Rv2546/vapC18 | Rv2615c/PE_PGRS45 | |
| Fe_supp_jason_reseq | 0.207 | -1.085 |
| low_pH_jason_reseq | -0.013 | -0.669 |
| NO_jason_reseq | -0.226 | 0.097 |
| B6_jason_reseq | 0.649 | -0.357 |
| MHCII_jason_reseq | -0.037 | 0.148 |
| Isoniazid02 | -0.21 | -1.291 |
| Rifampicin4 | 0.509 | 0.352 |
| Ethambutol3 | -0.011 | -0.563 |
| Meropenem3 | 0.096 | -0.575 |
| Vancomycin16 | 0.52 | -0.761 |
| Rv2680_day32 | -0.419 | 0.016 |
| H37Rv_KO_MarP | -0.395 | 0.525 |
| hypoxia_3wks | 0.482 | -0.211 |
| hypoxia_6wks | -0.182 | -0.251 |
| glycerol | -0.604 | 0.085 |
| cholesterol | -0.124 | 0.553 |
| AJ | 0.363 | 0.524 |
| Bibs02 | 0.567 | 0.233 |
| Bibs02c | -0.455 | -0.303 |
| BL6 | 0.017 | -1.318 |
| BL6a | 0.044 | -1.037 |
| BXD01 | -0.71 | -0.763 |
| BXD010 | 0.122 | -0.546 |
| BXD011 | -0.299 | -0.832 |
| BXD03 | 0.377 | -0.401 |
| BXD04 | -0.318 | -0.766 |
| BXD05 | 0.408 | 0.033 |
| BXD06 | -0.367 | -0.872 |
| BXD07 | -0.153 | -0.697 |
| BXD08 | -0.342 | -0.809 |
| BXD09 | 0.069 | -0.68 |
| CAST | 0.459 | 0.267 |
| CCcont | -0.135 | -1.5 |
| DS01 | -0.01 | -0.181 |
| DS02 | 0.621 | -0.054 |
| DS04 | 0.697 | -0.187 |
| DS0c | -0.123 | -0.209 |
| GP01 | -0.089 | -0.193 |
| GP02 | 0.858 | 0.154 |
| GP0c | 0.268 | -0.407 |
| NOD | 0.649 | -0.49 |
| NZO | -0.433 | 0.431 |
| PWK | 1.209 | 0.06 |
| H37Rv_KO_CtpC | -0.213 | -0.417 |
| H37Rv_KO_CtpD | 0.257 | -0.886 |
| H37Rv_KO_Rv1272 | -0.059 | -0.628 |
| H37Rv_KO_SugABC | 0.483 | -0.82 |
| H37Rv_KO_MbtN | -1.068 | 0.293 |
| Trans05 | -0.481 | -1.047 |
| macrophage_unactivated | -0.215 | -1.01 |
| IL1 | -0.083 | -1.118 |
| Rapamycin | -0.371 | -0.982 |
| Tcell | -1.108 | -1.342 |
| GMCSF | -0.615 | 0.57 |
| IFNab | 0.082 | -0.457 |
| IFNg | -0.502 | -0.457 |
| IFNg_GMCSF1 | -0.591 | -0.028 |
| Rv1432_day32 | 0.503 | 0.678 |
| Rv1565c_day32 | 0.0 | 0.477 |
| secA2_input | 0.582 | -0.477 |
| delta_Rv3594 | -0.119 | -0.349 |
| delta_Rv3717 | 0.189 | -0.449 |
| delta_Rv3811 | -0.164 | -0.937 |
| delta_Rv0954 | 0.472 | -0.053 |
| PonA1 | 0.414 | 0.194 |
| EccD1_KO | 1.296 | 0.372 |
| EspI_KO | 0.499 | 0.351 |
| PE35_KO | 0.528 | 0.33 |
| PPE68_KO | 0.048 | -0.211 |
| glycerol2 | 0.156 | -1.702 |
| lignocerate | -0.37 | -0.967 |
| oleate | 0.115 | -1.344 |
| phosphatidylcholine | -0.394 | -1.139 |
| acetate | -0.613 | -0.755 |
| glucAc | -0.693 | -0.125 |
| Rv0950ko | 1.294 | 0.124 |
| Rv1096ko | 0.139 | 0.184 |
| Rv3684ko | -0.373 | -0.069 |
| delta_otsA_trehalose | 2.243 | 2.564 |