Top 10 genes with highest correlation to Rv2546/vapC18:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3577/- | (cc=0.5312) | info on Rv3577/- |
| Rv0551c/fadD8 | (cc=0.5171) | info on Rv0551c/fadD8 |
| Rv2489c/- | (cc=0.4523) | info on Rv2489c/- |
| Rv1735c/- | (cc=0.4484) | info on Rv1735c/- |
| Rv2615c/PE_PGRS45 | (cc=0.4326) | info on Rv2615c/PE_PGRS45 |
| Rv2994/- | (cc=0.4294) | info on Rv2994/- |
| Rv1765c/- | (cc=0.4288) | info on Rv1765c/- |
| Rv2407/- | (cc=0.4272) | info on Rv2407/- |
| Rv2285/- | (cc=0.4259) | info on Rv2285/- |
| Rv2701c/suhB | (cc=0.4209) | info on Rv2701c/suhB |
Correlation of Rv2546/vapC18 with Rv1735c/-
Normalized LFCs for Rv2546/vapC18:
(description and provenance of datasets)
| Rv2546/vapC18 | Rv1735c/- | |
| Fe_supp_jason_reseq | 0.207 | -1.307 |
| low_pH_jason_reseq | -0.013 | -0.656 |
| NO_jason_reseq | -0.226 | 0.118 |
| B6_jason_reseq | 0.649 | -1.084 |
| MHCII_jason_reseq | -0.037 | 0.265 |
| Isoniazid02 | -0.21 | 1.275 |
| Rifampicin4 | 0.509 | 0.501 |
| Ethambutol3 | -0.011 | 0.916 |
| Meropenem3 | 0.096 | 0.264 |
| Vancomycin16 | 0.52 | 0.716 |
| Rv2680_day32 | -0.419 | 0.0 |
| H37Rv_KO_MarP | -0.395 | 0.559 |
| hypoxia_3wks | 0.482 | 0.578 |
| hypoxia_6wks | -0.182 | -1.825 |
| glycerol | -0.604 | -1.444 |
| cholesterol | -0.124 | -1.572 |
| AJ | 0.363 | 0.104 |
| Bibs02 | 0.567 | -0.66 |
| Bibs02c | -0.455 | -0.571 |
| BL6 | 0.017 | -2.2 |
| BL6a | 0.044 | -2.426 |
| BXD01 | -0.71 | -1.284 |
| BXD010 | 0.122 | -2.074 |
| BXD011 | -0.299 | -1.905 |
| BXD03 | 0.377 | -1.656 |
| BXD04 | -0.318 | 0.0 |
| BXD05 | 0.408 | -1.264 |
| BXD06 | -0.367 | -2.221 |
| BXD07 | -0.153 | -2.304 |
| BXD08 | -0.342 | -0.976 |
| BXD09 | 0.069 | -1.64 |
| CAST | 0.459 | 0.337 |
| CCcont | -0.135 | -2.554 |
| DS01 | -0.01 | -0.703 |
| DS02 | 0.621 | 0.928 |
| DS04 | 0.697 | 1.665 |
| DS0c | -0.123 | -0.102 |
| GP01 | -0.089 | 1.249 |
| GP02 | 0.858 | 1.619 |
| GP0c | 0.268 | -0.126 |
| NOD | 0.649 | 0.347 |
| NZO | -0.433 | -1.319 |
| PWK | 1.209 | 0.688 |
| H37Rv_KO_CtpC | -0.213 | 0.623 |
| H37Rv_KO_CtpD | 0.257 | -1.945 |
| H37Rv_KO_Rv1272 | -0.059 | 0.834 |
| H37Rv_KO_SugABC | 0.483 | -0.844 |
| H37Rv_KO_MbtN | -1.068 | -1.715 |
| Trans05 | -0.481 | -0.114 |
| macrophage_unactivated | -0.215 | -2.273 |
| IL1 | -0.083 | -3.283 |
| Rapamycin | -0.371 | -3.069 |
| Tcell | -1.108 | -2.076 |
| GMCSF | -0.615 | -2.778 |
| IFNab | 0.082 | -3.694 |
| IFNg | -0.502 | -2.536 |
| IFNg_GMCSF1 | -0.591 | -2.13 |
| Rv1432_day32 | 0.503 | 0.0 |
| Rv1565c_day32 | 0.0 | 1.238 |
| secA2_input | 0.582 | -0.429 |
| delta_Rv3594 | -0.119 | -0.832 |
| delta_Rv3717 | 0.189 | 0.165 |
| delta_Rv3811 | -0.164 | -0.61 |
| delta_Rv0954 | 0.472 | -1.499 |
| PonA1 | 0.414 | 0.092 |
| EccD1_KO | 1.296 | 0.793 |
| EspI_KO | 0.499 | -0.394 |
| PE35_KO | 0.528 | 0.435 |
| PPE68_KO | 0.048 | 1.901 |
| glycerol2 | 0.156 | -0.787 |
| lignocerate | -0.37 | -1.162 |
| oleate | 0.115 | -0.32 |
| phosphatidylcholine | -0.394 | -0.56 |
| acetate | -0.613 | -1.993 |
| glucAc | -0.693 | -2.721 |
| Rv0950ko | 1.294 | 1.001 |
| Rv1096ko | 0.139 | 1.454 |
| Rv3684ko | -0.373 | 1.15 |
| delta_otsA_trehalose | 2.243 | 0.564 |