Top 10 genes with highest correlation to Rv2546/vapC18:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3577/- | (cc=0.5312) | info on Rv3577/- |
| Rv0551c/fadD8 | (cc=0.5171) | info on Rv0551c/fadD8 |
| Rv2489c/- | (cc=0.4523) | info on Rv2489c/- |
| Rv1735c/- | (cc=0.4484) | info on Rv1735c/- |
| Rv2615c/PE_PGRS45 | (cc=0.4326) | info on Rv2615c/PE_PGRS45 |
| Rv2994/- | (cc=0.4294) | info on Rv2994/- |
| Rv1765c/- | (cc=0.4288) | info on Rv1765c/- |
| Rv2407/- | (cc=0.4272) | info on Rv2407/- |
| Rv2285/- | (cc=0.4259) | info on Rv2285/- |
| Rv2701c/suhB | (cc=0.4209) | info on Rv2701c/suhB |
Correlation of Rv2546/vapC18 with Rv2407/-
Normalized LFCs for Rv2546/vapC18:
(description and provenance of datasets)
| Rv2546/vapC18 | Rv2407/- | |
| Fe_supp_jason_reseq | 0.207 | -0.867 |
| low_pH_jason_reseq | -0.013 | -0.539 |
| NO_jason_reseq | -0.226 | 0.071 |
| B6_jason_reseq | 0.649 | -0.483 |
| MHCII_jason_reseq | -0.037 | 0.108 |
| Isoniazid02 | -0.21 | 0.54 |
| Rifampicin4 | 0.509 | 0.154 |
| Ethambutol3 | -0.011 | 1.069 |
| Meropenem3 | 0.096 | 0.627 |
| Vancomycin16 | 0.52 | 0.608 |
| Rv2680_day32 | -0.419 | 0.851 |
| H37Rv_KO_MarP | -0.395 | -0.535 |
| hypoxia_3wks | 0.482 | -0.152 |
| hypoxia_6wks | -0.182 | -0.04 |
| glycerol | -0.604 | -0.118 |
| cholesterol | -0.124 | -0.351 |
| AJ | 0.363 | -0.437 |
| Bibs02 | 0.567 | 0.427 |
| Bibs02c | -0.455 | -0.3 |
| BL6 | 0.017 | -0.334 |
| BL6a | 0.044 | -0.433 |
| BXD01 | -0.71 | -0.348 |
| BXD010 | 0.122 | 0.124 |
| BXD011 | -0.299 | -0.259 |
| BXD03 | 0.377 | -0.135 |
| BXD04 | -0.318 | -1.257 |
| BXD05 | 0.408 | 0.107 |
| BXD06 | -0.367 | -0.532 |
| BXD07 | -0.153 | -0.1 |
| BXD08 | -0.342 | 0.175 |
| BXD09 | 0.069 | 0.192 |
| CAST | 0.459 | 0.128 |
| CCcont | -0.135 | -0.424 |
| DS01 | -0.01 | -0.373 |
| DS02 | 0.621 | -0.249 |
| DS04 | 0.697 | 0.492 |
| DS0c | -0.123 | -0.526 |
| GP01 | -0.089 | 1.309 |
| GP02 | 0.858 | -0.195 |
| GP0c | 0.268 | 0.276 |
| NOD | 0.649 | 1.054 |
| NZO | -0.433 | 0.217 |
| PWK | 1.209 | 0.098 |
| H37Rv_KO_CtpC | -0.213 | -0.14 |
| H37Rv_KO_CtpD | 0.257 | 0.537 |
| H37Rv_KO_Rv1272 | -0.059 | -0.037 |
| H37Rv_KO_SugABC | 0.483 | 0.897 |
| H37Rv_KO_MbtN | -1.068 | -0.125 |
| Trans05 | -0.481 | 0.414 |
| macrophage_unactivated | -0.215 | -0.716 |
| IL1 | -0.083 | -0.353 |
| Rapamycin | -0.371 | -0.15 |
| Tcell | -1.108 | -0.189 |
| GMCSF | -0.615 | -0.428 |
| IFNab | 0.082 | -0.423 |
| IFNg | -0.502 | 0.174 |
| IFNg_GMCSF1 | -0.591 | 0.456 |
| Rv1432_day32 | 0.503 | 0.623 |
| Rv1565c_day32 | 0.0 | 0.33 |
| secA2_input | 0.582 | 1.647 |
| delta_Rv3594 | -0.119 | -0.168 |
| delta_Rv3717 | 0.189 | 0.011 |
| delta_Rv3811 | -0.164 | -0.294 |
| delta_Rv0954 | 0.472 | -0.093 |
| PonA1 | 0.414 | -0.361 |
| EccD1_KO | 1.296 | 1.375 |
| EspI_KO | 0.499 | 1.124 |
| PE35_KO | 0.528 | 0.493 |
| PPE68_KO | 0.048 | 0.541 |
| glycerol2 | 0.156 | -0.105 |
| lignocerate | -0.37 | -0.012 |
| oleate | 0.115 | 0.238 |
| phosphatidylcholine | -0.394 | 0.099 |
| acetate | -0.613 | 0.151 |
| glucAc | -0.693 | 0.144 |
| Rv0950ko | 1.294 | 0.85 |
| Rv1096ko | 0.139 | 0.787 |
| Rv3684ko | -0.373 | 0.717 |
| delta_otsA_trehalose | 2.243 | 1.7 |