TnSeqCorr

Top 10 genes with highest correlation to Rv2546/vapC18:

update plotcorrelationlink to info on gene
Rv3577/- (cc=0.5312) info on Rv3577/-
Rv0551c/fadD8 (cc=0.5171) info on Rv0551c/fadD8
Rv2489c/- (cc=0.4523) info on Rv2489c/-
Rv1735c/- (cc=0.4484) info on Rv1735c/-
Rv2615c/PE_PGRS45 (cc=0.4326) info on Rv2615c/PE_PGRS45
Rv2994/- (cc=0.4294) info on Rv2994/-
Rv1765c/- (cc=0.4288) info on Rv1765c/-
Rv2407/- (cc=0.4272) info on Rv2407/-
Rv2285/- (cc=0.4259) info on Rv2285/-
Rv2701c/suhB (cc=0.4209) info on Rv2701c/suhB

Correlation of Rv2546/vapC18 with Rv2285/-

Normalized LFCs for Rv2546/vapC18:
(description and provenance of datasets)
Rv2546/vapC18Rv2285/-
Fe_supp_jason_reseq

0.207

-0.933

low_pH_jason_reseq

-0.013

0.684

NO_jason_reseq

-0.226

0.089

B6_jason_reseq

0.649

1.203

MHCII_jason_reseq

-0.037

-0.13

Isoniazid02

-0.21

0.528

Rifampicin4

0.509

0.043

Ethambutol3

-0.011

0.331

Meropenem3

0.096

1.58

Vancomycin16

0.52

0.085

Rv2680_day32

-0.419

-0.21

H37Rv_KO_MarP

-0.395

-0.341

hypoxia_3wks

0.482

-0.12

hypoxia_6wks

-0.182

-0.234

glycerol

-0.604

0.152

cholesterol

-0.124

0.508

AJ

0.363

0.303

Bibs02

0.567

0.419

Bibs02c

-0.455

-0.408

BL6

0.017

-0.632

BL6a

0.044

-0.426

BXD01

-0.71

-0.915

BXD010

0.122

-0.453

BXD011

-0.299

-0.45

BXD03

0.377

-0.5

BXD04

-0.318

-0.681

BXD05

0.408

0.278

BXD06

-0.367

-0.208

BXD07

-0.153

-0.65

BXD08

-0.342

-0.696

BXD09

0.069

-0.157

CAST

0.459

0.334

CCcont

-0.135

-1.587

DS01

-0.01

-0.192

DS02

0.621

0.306

DS04

0.697

-1.162

DS0c

-0.123

0.325

GP01

-0.089

-0.129

GP02

0.858

0.579

GP0c

0.268

-0.17

NOD

0.649

0.4

NZO

-0.433

0.715

PWK

1.209

0.331

H37Rv_KO_CtpC

-0.213

-0.805

H37Rv_KO_CtpD

0.257

-0.344

H37Rv_KO_Rv1272

-0.059

-0.521

H37Rv_KO_SugABC

0.483

-0.234

H37Rv_KO_MbtN

-1.068

-0.782

Trans05

-0.481

-0.579

macrophage_unactivated

-0.215

-0.129

IL1

-0.083

0.03

Rapamycin

-0.371

-0.427

Tcell

-1.108

-0.342

GMCSF

-0.615

-1.336

IFNab

0.082

-0.626

IFNg

-0.502

-0.949

IFNg_GMCSF1

-0.591

0.094

Rv1432_day32

0.503

0.739

Rv1565c_day32

0.0

-0.248

secA2_input

0.582

0.027

delta_Rv3594

-0.119

0.274

delta_Rv3717

0.189

0.676

delta_Rv3811

-0.164

0.877

delta_Rv0954

0.472

0.707

PonA1

0.414

0.375

EccD1_KO

1.296

1.437

EspI_KO

0.499

0.779

PE35_KO

0.528

0.723

PPE68_KO

0.048

0.835

glycerol2

0.156

-0.513

lignocerate

-0.37

-0.653

oleate

0.115

0.069

phosphatidylcholine

-0.394

-0.202

acetate

-0.613

-0.861

glucAc

-0.693

-0.887

Rv0950ko

1.294

-0.431

Rv1096ko

0.139

0.751

Rv3684ko

-0.373

0.508

delta_otsA_trehalose

2.243

0.456