Top 10 genes with highest correlation to Rv2546/vapC18:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3577/- | (cc=0.5312) | info on Rv3577/- |
| Rv0551c/fadD8 | (cc=0.5171) | info on Rv0551c/fadD8 |
| Rv2489c/- | (cc=0.4523) | info on Rv2489c/- |
| Rv1735c/- | (cc=0.4484) | info on Rv1735c/- |
| Rv2615c/PE_PGRS45 | (cc=0.4326) | info on Rv2615c/PE_PGRS45 |
| Rv2994/- | (cc=0.4294) | info on Rv2994/- |
| Rv1765c/- | (cc=0.4288) | info on Rv1765c/- |
| Rv2407/- | (cc=0.4272) | info on Rv2407/- |
| Rv2285/- | (cc=0.4259) | info on Rv2285/- |
| Rv2701c/suhB | (cc=0.4209) | info on Rv2701c/suhB |
Correlation of Rv2546/vapC18 with Rv2489c/-
Normalized LFCs for Rv2546/vapC18:
(description and provenance of datasets)
| Rv2546/vapC18 | Rv2489c/- | |
| Fe_supp_jason_reseq | 0.207 | -1.013 |
| low_pH_jason_reseq | -0.013 | -1.445 |
| NO_jason_reseq | -0.226 | -0.081 |
| B6_jason_reseq | 0.649 | 0.492 |
| MHCII_jason_reseq | -0.037 | -0.589 |
| Isoniazid02 | -0.21 | -1.867 |
| Rifampicin4 | 0.509 | -0.068 |
| Ethambutol3 | -0.011 | -1.887 |
| Meropenem3 | 0.096 | -2.193 |
| Vancomycin16 | 0.52 | -1.143 |
| Rv2680_day32 | -0.419 | 1.99 |
| H37Rv_KO_MarP | -0.395 | -0.082 |
| hypoxia_3wks | 0.482 | -0.02 |
| hypoxia_6wks | -0.182 | -0.393 |
| glycerol | -0.604 | -0.753 |
| cholesterol | -0.124 | -0.125 |
| AJ | 0.363 | 0.824 |
| Bibs02 | 0.567 | -0.347 |
| Bibs02c | -0.455 | -0.271 |
| BL6 | 0.017 | -0.412 |
| BL6a | 0.044 | -0.682 |
| BXD01 | -0.71 | -0.975 |
| BXD010 | 0.122 | -0.612 |
| BXD011 | -0.299 | -1.558 |
| BXD03 | 0.377 | -1.984 |
| BXD04 | -0.318 | -1.492 |
| BXD05 | 0.408 | -0.694 |
| BXD06 | -0.367 | -0.229 |
| BXD07 | -0.153 | -1.118 |
| BXD08 | -0.342 | -1.045 |
| BXD09 | 0.069 | -1.074 |
| CAST | 0.459 | 0.831 |
| CCcont | -0.135 | -1.79 |
| DS01 | -0.01 | 0.527 |
| DS02 | 0.621 | 0.548 |
| DS04 | 0.697 | 1.113 |
| DS0c | -0.123 | 0.806 |
| GP01 | -0.089 | 0.343 |
| GP02 | 0.858 | 0.134 |
| GP0c | 0.268 | -0.899 |
| NOD | 0.649 | 1.015 |
| NZO | -0.433 | 0.523 |
| PWK | 1.209 | 0.789 |
| H37Rv_KO_CtpC | -0.213 | -0.744 |
| H37Rv_KO_CtpD | 0.257 | 0.098 |
| H37Rv_KO_Rv1272 | -0.059 | -0.94 |
| H37Rv_KO_SugABC | 0.483 | -0.572 |
| H37Rv_KO_MbtN | -1.068 | -1.755 |
| Trans05 | -0.481 | -0.055 |
| macrophage_unactivated | -0.215 | -2.276 |
| IL1 | -0.083 | -1.605 |
| Rapamycin | -0.371 | -2.029 |
| Tcell | -1.108 | -1.812 |
| GMCSF | -0.615 | -1.447 |
| IFNab | 0.082 | -1.342 |
| IFNg | -0.502 | -0.837 |
| IFNg_GMCSF1 | -0.591 | -1.348 |
| Rv1432_day32 | 0.503 | -0.877 |
| Rv1565c_day32 | 0.0 | -0.351 |
| secA2_input | 0.582 | -0.474 |
| delta_Rv3594 | -0.119 | 0.824 |
| delta_Rv3717 | 0.189 | 1.156 |
| delta_Rv3811 | -0.164 | 0.346 |
| delta_Rv0954 | 0.472 | 0.933 |
| PonA1 | 0.414 | 1.528 |
| EccD1_KO | 1.296 | 0.046 |
| EspI_KO | 0.499 | 0.411 |
| PE35_KO | 0.528 | -0.061 |
| PPE68_KO | 0.048 | -0.067 |
| glycerol2 | 0.156 | -1.67 |
| lignocerate | -0.37 | -2.159 |
| oleate | 0.115 | -0.788 |
| phosphatidylcholine | -0.394 | -1.669 |
| acetate | -0.613 | -2.329 |
| glucAc | -0.693 | -1.649 |
| Rv0950ko | 1.294 | 0.808 |
| Rv1096ko | 0.139 | 0.654 |
| Rv3684ko | -0.373 | 0.668 |
| delta_otsA_trehalose | 2.243 | 0.635 |