Top 10 genes with highest correlation to Rv2419c/gpgP:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2563/- | (cc=0.531) | info on Rv2563/- |
| Rv0561c/- | (cc=0.5284) | info on Rv0561c/- |
| Rv1287/- | (cc=0.5156) | info on Rv1287/- |
| Rv2344c/dgt | (cc=0.5007) | info on Rv2344c/dgt |
| Rv1140/- | (cc=0.5) | info on Rv1140/- |
| Rv1095/phoH2 | (cc=0.4901) | info on Rv1095/phoH2 |
| Rv2258c/- | (cc=0.48) | info on Rv2258c/- |
| Rv3557c/- | (cc=0.4732) | info on Rv3557c/- |
| Rv1473/- | (cc=0.4728) | info on Rv1473/- |
| Rv3283/sseA | (cc=0.4722) | info on Rv3283/sseA |
Correlation of Rv2419c/gpgP with Rv2563/-
Normalized LFCs for Rv2419c/gpgP:
(description and provenance of datasets)
| Rv2419c/gpgP | Rv2563/- | |
| Fe_supp_jason_reseq | 0.538 | 1.514 |
| low_pH_jason_reseq | 0.303 | 0.0 |
| NO_jason_reseq | -0.845 | -4.161 |
| B6_jason_reseq | -0.649 | -2.7 |
| MHCII_jason_reseq | -0.437 | -2.378 |
| Isoniazid02 | 0.796 | 0.677 |
| Rifampicin4 | 0.146 | -1.868 |
| Ethambutol3 | 0.799 | 2.152 |
| Meropenem3 | -0.454 | -1.269 |
| Vancomycin16 | 0.546 | -0.488 |
| Rv2680_day32 | -0.249 | -1.894 |
| H37Rv_KO_MarP | 0.531 | 0.364 |
| hypoxia_3wks | 0.371 | -2.939 |
| hypoxia_6wks | -0.672 | -3.627 |
| glycerol | 1.017 | 1.156 |
| cholesterol | 1.049 | 0.46 |
| AJ | -0.659 | -4.323 |
| Bibs02 | -1.417 | -0.13 |
| Bibs02c | -0.887 | -0.149 |
| BL6 | -0.627 | -2.974 |
| BL6a | -1.339 | -1.34 |
| BXD01 | -0.552 | -3.227 |
| BXD010 | -0.993 | -3.045 |
| BXD011 | -0.861 | -2.167 |
| BXD03 | -0.914 | -2.443 |
| BXD04 | -0.959 | -2.94 |
| BXD05 | -1.043 | -3.2 |
| BXD06 | -1.035 | -3.307 |
| BXD07 | -0.587 | -3.167 |
| BXD08 | -1.031 | -3.162 |
| BXD09 | -0.95 | -3.341 |
| CAST | -1.346 | -2.194 |
| CCcont | 1.503 | -0.754 |
| DS01 | 0.431 | 1.932 |
| DS02 | -0.922 | 1.281 |
| DS04 | -0.822 | 1.206 |
| DS0c | -0.11 | 1.634 |
| GP01 | -0.765 | -2.446 |
| GP02 | -0.562 | -2.061 |
| GP0c | -1.008 | -3.221 |
| NOD | -1.126 | -0.898 |
| NZO | -0.441 | -3.835 |
| PWK | -1.326 | 0.665 |
| H37Rv_KO_CtpC | -0.814 | -1.997 |
| H37Rv_KO_CtpD | -0.635 | -1.089 |
| H37Rv_KO_Rv1272 | -0.953 | -1.451 |
| H37Rv_KO_SugABC | -0.669 | -1.736 |
| H37Rv_KO_MbtN | -0.362 | -2.191 |
| Trans05 | -0.883 | -2.988 |
| macrophage_unactivated | -0.316 | 1.411 |
| IL1 | -0.955 | -1.64 |
| Rapamycin | -0.632 | -0.651 |
| Tcell | -0.671 | -1.212 |
| GMCSF | 0.0 | -1.212 |
| IFNab | -1.351 | 0.729 |
| IFNg | -0.267 | -2.028 |
| IFNg_GMCSF1 | -0.314 | -0.434 |
| Rv1432_day32 | 0.0 | -0.884 |
| Rv1565c_day32 | 1.982 | 2.504 |
| secA2_input | -0.158 | 0.127 |
| delta_Rv3594 | 0.211 | -2.496 |
| delta_Rv3717 | 0.0 | -2.054 |
| delta_Rv3811 | -0.226 | -2.427 |
| delta_Rv0954 | 0.99 | 2.344 |
| PonA1 | 1.35 | 2.92 |
| EccD1_KO | 0.0 | -0.743 |
| EspI_KO | 1.269 | 1.395 |
| PE35_KO | 0.26 | 2.013 |
| PPE68_KO | -0.202 | 1.67 |
| glycerol2 | -0.057 | -3.095 |
| lignocerate | -1.033 | -1.315 |
| oleate | -1.103 | -3.265 |
| phosphatidylcholine | -0.819 | -1.693 |
| acetate | -1.074 | -0.893 |
| glucAc | -0.734 | -0.881 |
| Rv0950ko | 0.112 | 0.841 |
| Rv1096ko | 0.112 | 1.013 |
| Rv3684ko | 0.0 | -0.079 |
| delta_otsA_trehalose | -2.509 | -1.192 |