Top 10 genes with highest correlation to Rv2419c/gpgP:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2563/- | (cc=0.531) | info on Rv2563/- |
| Rv0561c/- | (cc=0.5284) | info on Rv0561c/- |
| Rv1287/- | (cc=0.5156) | info on Rv1287/- |
| Rv2344c/dgt | (cc=0.5007) | info on Rv2344c/dgt |
| Rv1140/- | (cc=0.5) | info on Rv1140/- |
| Rv1095/phoH2 | (cc=0.4901) | info on Rv1095/phoH2 |
| Rv2258c/- | (cc=0.48) | info on Rv2258c/- |
| Rv3557c/- | (cc=0.4732) | info on Rv3557c/- |
| Rv1473/- | (cc=0.4728) | info on Rv1473/- |
| Rv3283/sseA | (cc=0.4722) | info on Rv3283/sseA |
Correlation of Rv2419c/gpgP with Rv1287/-
Normalized LFCs for Rv2419c/gpgP:
(description and provenance of datasets)
| Rv2419c/gpgP | Rv1287/- | |
| Fe_supp_jason_reseq | 0.538 | 2.9 |
| low_pH_jason_reseq | 0.303 | 0.323 |
| NO_jason_reseq | -0.845 | -0.583 |
| B6_jason_reseq | -0.649 | 0.571 |
| MHCII_jason_reseq | -0.437 | 0.098 |
| Isoniazid02 | 0.796 | 0.805 |
| Rifampicin4 | 0.146 | -0.374 |
| Ethambutol3 | 0.799 | 0.822 |
| Meropenem3 | -0.454 | 0.633 |
| Vancomycin16 | 0.546 | -0.31 |
| Rv2680_day32 | -0.249 | -2.282 |
| H37Rv_KO_MarP | 0.531 | 0.24 |
| hypoxia_3wks | 0.371 | -2.999 |
| hypoxia_6wks | -0.672 | -2.714 |
| glycerol | 1.017 | -0.66 |
| cholesterol | 1.049 | 2.591 |
| AJ | -0.659 | -1.44 |
| Bibs02 | -1.417 | -0.309 |
| Bibs02c | -0.887 | -0.64 |
| BL6 | -0.627 | -2.144 |
| BL6a | -1.339 | -2.04 |
| BXD01 | -0.552 | -2.037 |
| BXD010 | -0.993 | -1.759 |
| BXD011 | -0.861 | -2.084 |
| BXD03 | -0.914 | -1.284 |
| BXD04 | -0.959 | -1.934 |
| BXD05 | -1.043 | -1.929 |
| BXD06 | -1.035 | -1.914 |
| BXD07 | -0.587 | -1.315 |
| BXD08 | -1.031 | -1.827 |
| BXD09 | -0.95 | -2.409 |
| CAST | -1.346 | -1.779 |
| CCcont | 1.503 | -0.729 |
| DS01 | 0.431 | -0.772 |
| DS02 | -0.922 | -0.758 |
| DS04 | -0.822 | -0.593 |
| DS0c | -0.11 | -0.069 |
| GP01 | -0.765 | -1.865 |
| GP02 | -0.562 | -1.654 |
| GP0c | -1.008 | -2.455 |
| NOD | -1.126 | -1.886 |
| NZO | -0.441 | -2.419 |
| PWK | -1.326 | -1.391 |
| H37Rv_KO_CtpC | -0.814 | 0.872 |
| H37Rv_KO_CtpD | -0.635 | -0.683 |
| H37Rv_KO_Rv1272 | -0.953 | -1.513 |
| H37Rv_KO_SugABC | -0.669 | -1.251 |
| H37Rv_KO_MbtN | -0.362 | -1.062 |
| Trans05 | -0.883 | -1.721 |
| macrophage_unactivated | -0.316 | -0.12 |
| IL1 | -0.955 | -1.967 |
| Rapamycin | -0.632 | -0.761 |
| Tcell | -0.671 | 0.358 |
| GMCSF | 0.0 | -0.776 |
| IFNab | -1.351 | 0.435 |
| IFNg | -0.267 | -1.179 |
| IFNg_GMCSF1 | -0.314 | -1.225 |
| Rv1432_day32 | 0.0 | -0.787 |
| Rv1565c_day32 | 1.982 | 3.074 |
| secA2_input | -0.158 | 0.023 |
| delta_Rv3594 | 0.211 | 2.232 |
| delta_Rv3717 | 0.0 | 0.81 |
| delta_Rv3811 | -0.226 | 0.779 |
| delta_Rv0954 | 0.99 | 4.017 |
| PonA1 | 1.35 | 1.101 |
| EccD1_KO | 0.0 | 1.151 |
| EspI_KO | 1.269 | 2.321 |
| PE35_KO | 0.26 | 1.473 |
| PPE68_KO | -0.202 | 2.342 |
| glycerol2 | -0.057 | -0.43 |
| lignocerate | -1.033 | 0.675 |
| oleate | -1.103 | -0.603 |
| phosphatidylcholine | -0.819 | -0.043 |
| acetate | -1.074 | 0.025 |
| glucAc | -0.734 | 0.122 |
| Rv0950ko | 0.112 | -0.045 |
| Rv1096ko | 0.112 | 0.353 |
| Rv3684ko | 0.0 | 1.484 |
| delta_otsA_trehalose | -2.509 | 1.312 |