Top 10 genes with highest correlation to Rv2405/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0278c/PE_PGRS3 | (cc=0.6936) | info on Rv0278c/PE_PGRS3 |
| Rv2638/- | (cc=0.6635) | info on Rv2638/- |
| Rv0887c/- | (cc=0.6525) | info on Rv0887c/- |
| Rv3395c/- | (cc=0.6506) | info on Rv3395c/- |
| Rv0379/secE2 | (cc=0.6418) | info on Rv0379/secE2 |
| Rv3353c/- | (cc=0.6341) | info on Rv3353c/- |
| Rv0008c/- | (cc=0.6189) | info on Rv0008c/- |
| Rv0264c/- | (cc=0.6189) | info on Rv0264c/- |
| Rv3366/spoU | (cc=0.6165) | info on Rv3366/spoU |
| Rv0564c/gpdA1 | (cc=0.6131) | info on Rv0564c/gpdA1 |
Correlation of Rv2405/- with Rv3395c/-
Normalized LFCs for Rv2405/-:
(description and provenance of datasets)
| Rv2405/- | Rv3395c/- | |
| Fe_supp_jason_reseq | -0.863 | 0.38 |
| low_pH_jason_reseq | -0.249 | 0.142 |
| NO_jason_reseq | 1.289 | 1.496 |
| B6_jason_reseq | 0.026 | 2.279 |
| MHCII_jason_reseq | -0.023 | 2.468 |
| Isoniazid02 | 0.551 | 2.949 |
| Rifampicin4 | 1.259 | 1.776 |
| Ethambutol3 | 1.004 | 2.824 |
| Meropenem3 | 1.991 | 0.666 |
| Vancomycin16 | 0.915 | 0.83 |
| Rv2680_day32 | 0.978 | -0.131 |
| H37Rv_KO_MarP | 0.549 | 0.207 |
| hypoxia_3wks | -0.403 | -1.463 |
| hypoxia_6wks | -0.633 | -1.685 |
| glycerol | -0.013 | 1.328 |
| cholesterol | 0.824 | -0.104 |
| AJ | 0.556 | 0.723 |
| Bibs02 | -2.088 | -1.807 |
| Bibs02c | -0.146 | -0.13 |
| BL6 | 0.346 | -1.264 |
| BL6a | -0.636 | -0.217 |
| BXD01 | -0.97 | -1.377 |
| BXD010 | -1.103 | -1.699 |
| BXD011 | -0.769 | -1.44 |
| BXD03 | -1.365 | -2.616 |
| BXD04 | 0.613 | -1.368 |
| BXD05 | -0.845 | -1.745 |
| BXD06 | -0.805 | -2.2 |
| BXD07 | -1.193 | -3.021 |
| BXD08 | -0.972 | 1.085 |
| BXD09 | -1.346 | -2.15 |
| CAST | 0.439 | 0.02 |
| CCcont | -0.361 | -0.876 |
| DS01 | 0.383 | -0.303 |
| DS02 | 0.236 | 0.214 |
| DS04 | -0.163 | 0.0 |
| DS0c | 0.864 | 0.231 |
| GP01 | 0.541 | -1.669 |
| GP02 | 0.673 | -1.61 |
| GP0c | 1.023 | -0.931 |
| NOD | -0.109 | -0.971 |
| NZO | -0.604 | -0.218 |
| PWK | 0.897 | 0.871 |
| H37Rv_KO_CtpC | -0.923 | -3.435 |
| H37Rv_KO_CtpD | -0.052 | -2.598 |
| H37Rv_KO_Rv1272 | 0.092 | 1.022 |
| H37Rv_KO_SugABC | 0.166 | -1.973 |
| H37Rv_KO_MbtN | -0.66 | -1.836 |
| Trans05 | 0.077 | -0.045 |
| macrophage_unactivated | -0.543 | -3.857 |
| IL1 | -0.445 | -4.405 |
| Rapamycin | -0.46 | -3.069 |
| Tcell | -0.202 | -2.255 |
| GMCSF | -2.482 | -2.64 |
| IFNab | -0.593 | -0.553 |
| IFNg | -1.932 | -1.849 |
| IFNg_GMCSF1 | 0.308 | -1.524 |
| Rv1432_day32 | 1.116 | -0.142 |
| Rv1565c_day32 | 1.369 | -2.088 |
| secA2_input | 0.607 | 1.108 |
| delta_Rv3594 | 0.584 | 2.877 |
| delta_Rv3717 | -0.746 | 3.361 |
| delta_Rv3811 | 0.415 | 1.988 |
| delta_Rv0954 | 0.986 | 2.113 |
| PonA1 | 1.944 | 2.765 |
| EccD1_KO | -0.793 | -0.296 |
| EspI_KO | 0.533 | -1.335 |
| PE35_KO | -0.099 | -1.508 |
| PPE68_KO | -0.182 | -1.129 |
| glycerol2 | 2.888 | 3.254 |
| lignocerate | 3.535 | 3.841 |
| oleate | 0.251 | 0.0 |
| phosphatidylcholine | 2.711 | 3.408 |
| acetate | 2.898 | 5.243 |
| glucAc | 2.694 | 3.947 |
| Rv0950ko | 1.049 | -0.344 |
| Rv1096ko | 1.662 | 0.268 |
| Rv3684ko | 1.064 | 0.4 |
| delta_otsA_trehalose | -1.856 | -0.408 |