Top 10 genes with highest correlation to Rv2405/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0278c/PE_PGRS3 | (cc=0.6936) | info on Rv0278c/PE_PGRS3 |
| Rv2638/- | (cc=0.6635) | info on Rv2638/- |
| Rv0887c/- | (cc=0.6525) | info on Rv0887c/- |
| Rv3395c/- | (cc=0.6506) | info on Rv3395c/- |
| Rv0379/secE2 | (cc=0.6418) | info on Rv0379/secE2 |
| Rv3353c/- | (cc=0.6341) | info on Rv3353c/- |
| Rv0008c/- | (cc=0.6189) | info on Rv0008c/- |
| Rv0264c/- | (cc=0.6189) | info on Rv0264c/- |
| Rv3366/spoU | (cc=0.6165) | info on Rv3366/spoU |
| Rv0564c/gpdA1 | (cc=0.6131) | info on Rv0564c/gpdA1 |
Correlation of Rv2405/- with Rv3366/spoU
Normalized LFCs for Rv2405/-:
(description and provenance of datasets)
| Rv2405/- | Rv3366/spoU | |
| Fe_supp_jason_reseq | -0.863 | -1.345 |
| low_pH_jason_reseq | -0.249 | -1.36 |
| NO_jason_reseq | 1.289 | 0.94 |
| B6_jason_reseq | 0.026 | 0.179 |
| MHCII_jason_reseq | -0.023 | 0.919 |
| Isoniazid02 | 0.551 | -0.556 |
| Rifampicin4 | 1.259 | 0.793 |
| Ethambutol3 | 1.004 | -0.154 |
| Meropenem3 | 1.991 | 0.381 |
| Vancomycin16 | 0.915 | -0.138 |
| Rv2680_day32 | 0.978 | -0.683 |
| H37Rv_KO_MarP | 0.549 | 1.012 |
| hypoxia_3wks | -0.403 | -0.463 |
| hypoxia_6wks | -0.633 | -0.662 |
| glycerol | -0.013 | 0.563 |
| cholesterol | 0.824 | -0.44 |
| AJ | 0.556 | -0.081 |
| Bibs02 | -2.088 | -0.162 |
| Bibs02c | -0.146 | -0.142 |
| BL6 | 0.346 | -0.081 |
| BL6a | -0.636 | -1.045 |
| BXD01 | -0.97 | -1.875 |
| BXD010 | -1.103 | -1.722 |
| BXD011 | -0.769 | -1.305 |
| BXD03 | -1.365 | -1.743 |
| BXD04 | 0.613 | -1.927 |
| BXD05 | -0.845 | -0.858 |
| BXD06 | -0.805 | -1.423 |
| BXD07 | -1.193 | -2.32 |
| BXD08 | -0.972 | -0.595 |
| BXD09 | -1.346 | -1.348 |
| CAST | 0.439 | 0.317 |
| CCcont | -0.361 | -1.909 |
| DS01 | 0.383 | -0.979 |
| DS02 | 0.236 | -0.922 |
| DS04 | -0.163 | -0.145 |
| DS0c | 0.864 | -0.94 |
| GP01 | 0.541 | 0.436 |
| GP02 | 0.673 | -1.308 |
| GP0c | 1.023 | -0.058 |
| NOD | -0.109 | -0.358 |
| NZO | -0.604 | 0.377 |
| PWK | 0.897 | 0.114 |
| H37Rv_KO_CtpC | -0.923 | -0.02 |
| H37Rv_KO_CtpD | -0.052 | -0.065 |
| H37Rv_KO_Rv1272 | 0.092 | -1.386 |
| H37Rv_KO_SugABC | 0.166 | 0.15 |
| H37Rv_KO_MbtN | -0.66 | -0.681 |
| Trans05 | 0.077 | -1.305 |
| macrophage_unactivated | -0.543 | -1.944 |
| IL1 | -0.445 | -2.115 |
| Rapamycin | -0.46 | -3.637 |
| Tcell | -0.202 | -1.522 |
| GMCSF | -2.482 | -1.426 |
| IFNab | -0.593 | -2.582 |
| IFNg | -1.932 | -2.138 |
| IFNg_GMCSF1 | 0.308 | -1.335 |
| Rv1432_day32 | 1.116 | -0.014 |
| Rv1565c_day32 | 1.369 | 0.916 |
| secA2_input | 0.607 | -0.833 |
| delta_Rv3594 | 0.584 | -2.145 |
| delta_Rv3717 | -0.746 | -0.545 |
| delta_Rv3811 | 0.415 | -0.568 |
| delta_Rv0954 | 0.986 | -1.344 |
| PonA1 | 1.944 | -0.68 |
| EccD1_KO | -0.793 | -0.355 |
| EspI_KO | 0.533 | 0.433 |
| PE35_KO | -0.099 | -1.811 |
| PPE68_KO | -0.182 | -2.358 |
| glycerol2 | 2.888 | 1.319 |
| lignocerate | 3.535 | 1.128 |
| oleate | 0.251 | -0.457 |
| phosphatidylcholine | 2.711 | 1.297 |
| acetate | 2.898 | 1.215 |
| glucAc | 2.694 | 1.557 |
| Rv0950ko | 1.049 | 1.963 |
| Rv1096ko | 1.662 | 1.215 |
| Rv3684ko | 1.064 | 2.227 |
| delta_otsA_trehalose | -1.856 | -1.723 |