Top 10 genes with highest correlation to Rv2405/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0278c/PE_PGRS3 | (cc=0.6936) | info on Rv0278c/PE_PGRS3 |
| Rv2638/- | (cc=0.6635) | info on Rv2638/- |
| Rv0887c/- | (cc=0.6525) | info on Rv0887c/- |
| Rv3395c/- | (cc=0.6506) | info on Rv3395c/- |
| Rv0379/secE2 | (cc=0.6418) | info on Rv0379/secE2 |
| Rv3353c/- | (cc=0.6341) | info on Rv3353c/- |
| Rv0008c/- | (cc=0.6189) | info on Rv0008c/- |
| Rv0264c/- | (cc=0.6189) | info on Rv0264c/- |
| Rv3366/spoU | (cc=0.6165) | info on Rv3366/spoU |
| Rv0564c/gpdA1 | (cc=0.6131) | info on Rv0564c/gpdA1 |
Correlation of Rv2405/- with Rv0887c/-
Normalized LFCs for Rv2405/-:
(description and provenance of datasets)
| Rv2405/- | Rv0887c/- | |
| Fe_supp_jason_reseq | -0.863 | 0.415 |
| low_pH_jason_reseq | -0.249 | -0.599 |
| NO_jason_reseq | 1.289 | 2.392 |
| B6_jason_reseq | 0.026 | 2.335 |
| MHCII_jason_reseq | -0.023 | 2.223 |
| Isoniazid02 | 0.551 | 0.304 |
| Rifampicin4 | 1.259 | 0.051 |
| Ethambutol3 | 1.004 | -0.381 |
| Meropenem3 | 1.991 | 0.781 |
| Vancomycin16 | 0.915 | 1.666 |
| Rv2680_day32 | 0.978 | -0.413 |
| H37Rv_KO_MarP | 0.549 | 0.0 |
| hypoxia_3wks | -0.403 | -1.475 |
| hypoxia_6wks | -0.633 | -0.382 |
| glycerol | -0.013 | 0.541 |
| cholesterol | 0.824 | 0.71 |
| AJ | 0.556 | 0.138 |
| Bibs02 | -2.088 | 0.0 |
| Bibs02c | -0.146 | 1.035 |
| BL6 | 0.346 | -0.935 |
| BL6a | -0.636 | 0.36 |
| BXD01 | -0.97 | -0.542 |
| BXD010 | -1.103 | -2.717 |
| BXD011 | -0.769 | -1.316 |
| BXD03 | -1.365 | -2.012 |
| BXD04 | 0.613 | -0.048 |
| BXD05 | -0.845 | -0.545 |
| BXD06 | -0.805 | -1.152 |
| BXD07 | -1.193 | -1.677 |
| BXD08 | -0.972 | -1.219 |
| BXD09 | -1.346 | -1.702 |
| CAST | 0.439 | 0.185 |
| CCcont | -0.361 | 0.183 |
| DS01 | 0.383 | 0.577 |
| DS02 | 0.236 | 1.712 |
| DS04 | -0.163 | 0.087 |
| DS0c | 0.864 | 1.684 |
| GP01 | 0.541 | -1.0 |
| GP02 | 0.673 | -1.673 |
| GP0c | 1.023 | -0.714 |
| NOD | -0.109 | -0.412 |
| NZO | -0.604 | -0.785 |
| PWK | 0.897 | 0.24 |
| H37Rv_KO_CtpC | -0.923 | 0.061 |
| H37Rv_KO_CtpD | -0.052 | -1.885 |
| H37Rv_KO_Rv1272 | 0.092 | -0.464 |
| H37Rv_KO_SugABC | 0.166 | 0.306 |
| H37Rv_KO_MbtN | -0.66 | -1.749 |
| Trans05 | 0.077 | -3.216 |
| macrophage_unactivated | -0.543 | -1.098 |
| IL1 | -0.445 | -0.572 |
| Rapamycin | -0.46 | -3.397 |
| Tcell | -0.202 | 0.401 |
| GMCSF | -2.482 | -0.668 |
| IFNab | -0.593 | -1.466 |
| IFNg | -1.932 | -2.673 |
| IFNg_GMCSF1 | 0.308 | -1.304 |
| Rv1432_day32 | 1.116 | 0.0 |
| Rv1565c_day32 | 1.369 | -0.398 |
| secA2_input | 0.607 | -1.461 |
| delta_Rv3594 | 0.584 | 1.337 |
| delta_Rv3717 | -0.746 | 1.495 |
| delta_Rv3811 | 0.415 | 3.062 |
| delta_Rv0954 | 0.986 | 2.013 |
| PonA1 | 1.944 | 2.604 |
| EccD1_KO | -0.793 | -0.895 |
| EspI_KO | 0.533 | -0.776 |
| PE35_KO | -0.099 | 0.831 |
| PPE68_KO | -0.182 | -0.374 |
| glycerol2 | 2.888 | 2.844 |
| lignocerate | 3.535 | 3.288 |
| oleate | 0.251 | -0.179 |
| phosphatidylcholine | 2.711 | 2.962 |
| acetate | 2.898 | 3.586 |
| glucAc | 2.694 | 2.946 |
| Rv0950ko | 1.049 | 1.251 |
| Rv1096ko | 1.662 | 1.921 |
| Rv3684ko | 1.064 | 1.294 |
| delta_otsA_trehalose | -1.856 | -1.092 |