Top 10 genes with highest correlation to Rv2405/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0278c/PE_PGRS3 | (cc=0.6936) | info on Rv0278c/PE_PGRS3 |
| Rv2638/- | (cc=0.6635) | info on Rv2638/- |
| Rv0887c/- | (cc=0.6525) | info on Rv0887c/- |
| Rv3395c/- | (cc=0.6506) | info on Rv3395c/- |
| Rv0379/secE2 | (cc=0.6418) | info on Rv0379/secE2 |
| Rv3353c/- | (cc=0.6341) | info on Rv3353c/- |
| Rv0008c/- | (cc=0.6189) | info on Rv0008c/- |
| Rv0264c/- | (cc=0.6189) | info on Rv0264c/- |
| Rv3366/spoU | (cc=0.6165) | info on Rv3366/spoU |
| Rv0564c/gpdA1 | (cc=0.6131) | info on Rv0564c/gpdA1 |
Correlation of Rv2405/- with Rv0379/secE2
Normalized LFCs for Rv2405/-:
(description and provenance of datasets)
| Rv2405/- | Rv0379/secE2 | |
| Fe_supp_jason_reseq | -0.863 | -0.707 |
| low_pH_jason_reseq | -0.249 | -0.32 |
| NO_jason_reseq | 1.289 | 1.197 |
| B6_jason_reseq | 0.026 | -0.727 |
| MHCII_jason_reseq | -0.023 | -0.542 |
| Isoniazid02 | 0.551 | 0.799 |
| Rifampicin4 | 1.259 | 0.046 |
| Ethambutol3 | 1.004 | 1.3 |
| Meropenem3 | 1.991 | 0.272 |
| Vancomycin16 | 0.915 | 0.44 |
| Rv2680_day32 | 0.978 | -0.692 |
| H37Rv_KO_MarP | 0.549 | -0.339 |
| hypoxia_3wks | -0.403 | -1.703 |
| hypoxia_6wks | -0.633 | 0.597 |
| glycerol | -0.013 | 1.29 |
| cholesterol | 0.824 | 0.307 |
| AJ | 0.556 | 0.178 |
| Bibs02 | -2.088 | 0.943 |
| Bibs02c | -0.146 | 0.562 |
| BL6 | 0.346 | -0.753 |
| BL6a | -0.636 | -0.694 |
| BXD01 | -0.97 | -3.242 |
| BXD010 | -1.103 | -1.486 |
| BXD011 | -0.769 | -2.338 |
| BXD03 | -1.365 | -3.193 |
| BXD04 | 0.613 | -2.154 |
| BXD05 | -0.845 | -2.001 |
| BXD06 | -0.805 | -1.712 |
| BXD07 | -1.193 | -3.111 |
| BXD08 | -0.972 | -2.542 |
| BXD09 | -1.346 | -2.019 |
| CAST | 0.439 | -0.552 |
| CCcont | -0.361 | -1.958 |
| DS01 | 0.383 | 0.289 |
| DS02 | 0.236 | 0.159 |
| DS04 | -0.163 | 0.048 |
| DS0c | 0.864 | -0.13 |
| GP01 | 0.541 | -2.055 |
| GP02 | 0.673 | -2.334 |
| GP0c | 1.023 | -2.237 |
| NOD | -0.109 | -0.937 |
| NZO | -0.604 | -0.759 |
| PWK | 0.897 | 0.681 |
| H37Rv_KO_CtpC | -0.923 | -0.505 |
| H37Rv_KO_CtpD | -0.052 | -0.49 |
| H37Rv_KO_Rv1272 | 0.092 | 0.006 |
| H37Rv_KO_SugABC | 0.166 | -2.379 |
| H37Rv_KO_MbtN | -0.66 | -1.646 |
| Trans05 | 0.077 | -0.513 |
| macrophage_unactivated | -0.543 | 0.035 |
| IL1 | -0.445 | -0.392 |
| Rapamycin | -0.46 | -0.365 |
| Tcell | -0.202 | -1.039 |
| GMCSF | -2.482 | -2.521 |
| IFNab | -0.593 | -1.466 |
| IFNg | -1.932 | -1.048 |
| IFNg_GMCSF1 | 0.308 | 2.118 |
| Rv1432_day32 | 1.116 | 0.18 |
| Rv1565c_day32 | 1.369 | -0.085 |
| secA2_input | 0.607 | -1.49 |
| delta_Rv3594 | 0.584 | 0.078 |
| delta_Rv3717 | -0.746 | -1.111 |
| delta_Rv3811 | 0.415 | 0.843 |
| delta_Rv0954 | 0.986 | 1.454 |
| PonA1 | 1.944 | 0.87 |
| EccD1_KO | -0.793 | -0.02 |
| EspI_KO | 0.533 | 0.319 |
| PE35_KO | -0.099 | 0.055 |
| PPE68_KO | -0.182 | 0.32 |
| glycerol2 | 2.888 | 1.188 |
| lignocerate | 3.535 | 2.25 |
| oleate | 0.251 | 0.0 |
| phosphatidylcholine | 2.711 | 1.401 |
| acetate | 2.898 | 3.712 |
| glucAc | 2.694 | 3.12 |
| Rv0950ko | 1.049 | 3.347 |
| Rv1096ko | 1.662 | 2.925 |
| Rv3684ko | 1.064 | 2.689 |
| delta_otsA_trehalose | -1.856 | -1.235 |