Top 10 genes with highest correlation to Rv2251/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1975/- | (cc=0.4965) | info on Rv1975/- |
| Rv0845/- | (cc=0.4534) | info on Rv0845/- |
| Rv2980/- | (cc=0.4528) | info on Rv2980/- |
| Rv0463/- | (cc=0.4489) | info on Rv0463/- |
| Rv2250A/- | (cc=0.4446) | info on Rv2250A/- |
| Rv1234/- | (cc=0.4388) | info on Rv1234/- |
| Rv3678c/- | (cc=0.4371) | info on Rv3678c/- |
| Rv2673/aftC | (cc=0.4361) | info on Rv2673/aftC |
| Rv3141/fadB4 | (cc=0.4318) | info on Rv3141/fadB4 |
| Rv3074/- | (cc=0.4239) | info on Rv3074/- |
Correlation of Rv2251/- with Rv2250A/-
Normalized LFCs for Rv2251/-:
(description and provenance of datasets)
| Rv2251/- | Rv2250A/- | |
| Fe_supp_jason_reseq | -1.446 | -1.339 |
| low_pH_jason_reseq | -0.477 | -2.397 |
| NO_jason_reseq | -0.953 | 0.643 |
| B6_jason_reseq | -0.158 | 1.98 |
| MHCII_jason_reseq | -2.294 | -1.4 |
| Isoniazid02 | 1.542 | 1.609 |
| Rifampicin4 | -0.406 | 0.555 |
| Ethambutol3 | 0.752 | 0.421 |
| Meropenem3 | -0.827 | -0.153 |
| Vancomycin16 | 0.053 | 1.573 |
| Rv2680_day32 | -0.41 | 1.844 |
| H37Rv_KO_MarP | -0.744 | -0.207 |
| hypoxia_3wks | -1.483 | -1.176 |
| hypoxia_6wks | -0.388 | -1.576 |
| glycerol | 0.252 | -0.214 |
| cholesterol | 0.0 | -0.599 |
| AJ | -1.106 | -1.978 |
| Bibs02 | -0.082 | -1.733 |
| Bibs02c | 0.261 | -3.206 |
| BL6 | -0.156 | -2.156 |
| BL6a | -0.606 | -1.877 |
| BXD01 | -0.058 | -1.301 |
| BXD010 | -0.118 | -1.577 |
| BXD011 | 0.192 | -1.272 |
| BXD03 | 0.498 | -1.5 |
| BXD04 | 0.742 | -2.131 |
| BXD05 | -0.522 | -1.95 |
| BXD06 | -0.307 | -1.644 |
| BXD07 | -0.084 | -2.006 |
| BXD08 | 0.039 | -2.159 |
| BXD09 | -0.67 | -1.332 |
| CAST | -0.487 | -0.572 |
| CCcont | 0.64 | -2.574 |
| DS01 | -2.678 | -3.239 |
| DS02 | -0.707 | -3.151 |
| DS04 | 0.365 | 1.089 |
| DS0c | -1.953 | -3.521 |
| GP01 | -2.023 | -1.702 |
| GP02 | -1.546 | -1.434 |
| GP0c | -2.113 | -2.241 |
| NOD | 1.438 | 1.365 |
| NZO | 0.197 | -1.445 |
| PWK | 0.166 | -2.065 |
| H37Rv_KO_CtpC | -0.286 | -2.354 |
| H37Rv_KO_CtpD | -0.76 | -1.737 |
| H37Rv_KO_Rv1272 | -0.431 | -0.463 |
| H37Rv_KO_SugABC | -1.681 | -1.22 |
| H37Rv_KO_MbtN | -0.491 | -1.493 |
| Trans05 | 0.383 | 0.823 |
| macrophage_unactivated | 0.909 | -3.794 |
| IL1 | 1.563 | -1.293 |
| Rapamycin | 2.13 | -2.526 |
| Tcell | 0.583 | -1.421 |
| GMCSF | 2.001 | -3.174 |
| IFNab | 0.187 | -0.396 |
| IFNg | 1.71 | -2.51 |
| IFNg_GMCSF1 | 1.115 | -0.635 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | -1.205 | 1.322 |
| secA2_input | 1.565 | 0.202 |
| delta_Rv3594 | -0.777 | -0.661 |
| delta_Rv3717 | -1.447 | -1.388 |
| delta_Rv3811 | -1.328 | -3.771 |
| delta_Rv0954 | 0.266 | 1.682 |
| PonA1 | -2.608 | -1.773 |
| EccD1_KO | 1.684 | 3.848 |
| EspI_KO | 1.914 | 1.743 |
| PE35_KO | 2.007 | 3.36 |
| PPE68_KO | 1.872 | 2.038 |
| glycerol2 | -1.253 | -4.496 |
| lignocerate | -0.638 | -4.413 |
| oleate | -1.44 | -3.899 |
| phosphatidylcholine | -1.057 | -4.258 |
| acetate | -1.968 | -6.0 |
| glucAc | -0.795 | -4.351 |
| Rv0950ko | 1.478 | 0.971 |
| Rv1096ko | 0.76 | 0.844 |
| Rv3684ko | 1.189 | -0.727 |
| delta_otsA_trehalose | -1.612 | -2.076 |