TnSeqCorr

Top 10 genes with highest correlation to Rv2138/lppL:

update plotcorrelationlink to info on gene
Rv1641/infC (cc=0.5572) info on Rv1641/infC
Rv3618/- (cc=0.4467) info on Rv3618/-
Rv0375c/- (cc=0.4467) info on Rv0375c/-
Rv3614c/espD (cc=0.4379) info on Rv3614c/espD
Rv3362c/- (cc=0.4376) info on Rv3362c/-
Rv0857/- (cc=0.4321) info on Rv0857/-
Rv3616c/espA (cc=0.4306) info on Rv3616c/espA
Rv1323/fadA4 (cc=0.4266) info on Rv1323/fadA4
Rv2725c/hflX (cc=0.4264) info on Rv2725c/hflX
Rv0601c/- (cc=0.4225) info on Rv0601c/-

Correlation of Rv2138/lppL with Rv0857/-

Normalized LFCs for Rv2138/lppL:
(description and provenance of datasets)
Rv2138/lppLRv0857/-
Fe_supp_jason_reseq

1.339

-0.186

low_pH_jason_reseq

0.0

0.303

NO_jason_reseq

0.0

0.593

B6_jason_reseq

0.421

0.347

MHCII_jason_reseq

0.829

-0.808

Isoniazid02

0.987

-0.803

Rifampicin4

-0.271

-0.363

Ethambutol3

0.113

1.409

Meropenem3

-0.12

-0.214

Vancomycin16

0.0

-0.337

Rv2680_day32

-0.366

-0.223

H37Rv_KO_MarP

-0.116

0.261

hypoxia_3wks

0.459

-0.905

hypoxia_6wks

0.0

-1.232

glycerol

-0.518

-1.783

cholesterol

-0.067

-0.515

AJ

0.103

0.884

Bibs02

-0.948

-0.766

Bibs02c

-1.423

0.095

BL6

-0.746

-0.497

BL6a

-1.027

-0.994

BXD01

-1.134

-2.127

BXD010

-0.987

-1.038

BXD011

-0.661

-1.623

BXD03

-0.92

-1.843

BXD04

-0.953

-1.355

BXD05

0.059

-1.698

BXD06

-0.796

-1.767

BXD07

-0.619

-1.434

BXD08

-1.025

-1.778

BXD09

-0.729

-1.773

CAST

-0.219

0.113

CCcont

-0.89

-1.27

DS01

-0.606

-0.506

DS02

-0.972

-0.088

DS04

-1.689

-0.918

DS0c

-1.889

-0.096

GP01

-0.86

-0.949

GP02

-0.724

-1.704

GP0c

-1.132

-0.615

NOD

3.838

2.193

NZO

-1.357

0.118

PWK

0.676

-0.021

H37Rv_KO_CtpC

-0.617

-0.414

H37Rv_KO_CtpD

-1.103

-0.537

H37Rv_KO_Rv1272

-0.959

-2.21

H37Rv_KO_SugABC

-0.863

0.282

H37Rv_KO_MbtN

-0.897

-1.288

Trans05

-1.138

-1.292

macrophage_unactivated

0.0

-1.641

IL1

0.297

-0.133

Rapamycin

1.353

-0.807

Tcell

-0.349

-0.3

GMCSF

0.739

-0.898

IFNab

0.0

-0.366

IFNg

-0.286

-0.647

IFNg_GMCSF1

0.0

-1.213

Rv1432_day32

0.0

-1.92

Rv1565c_day32

-0.19

-0.447

secA2_input

-0.085

-0.102

delta_Rv3594

0.277

-0.092

delta_Rv3717

0.522

-0.629

delta_Rv3811

-0.306

0.697

delta_Rv0954

-0.266

0.672

PonA1

-0.372

-0.196

EccD1_KO

0.0

-0.082

EspI_KO

-0.588

-0.53

PE35_KO

-0.601

-0.974

PPE68_KO

0.298

0.106

glycerol2

0.0

0.397

lignocerate

0.0

0.127

oleate

0.0

0.967

phosphatidylcholine

0.0

1.056

acetate

0.229

0.0

glucAc

0.272

-0.349

Rv0950ko

0.302

-0.244

Rv1096ko

0.302

0.296

Rv3684ko

0.0

-0.809

delta_otsA_trehalose

-0.122

0.193