TnSeqCorr

Top 10 genes with highest correlation to Rv2135c/-:

update plotcorrelationlink to info on gene
Rv2904c/rplS (cc=0.6217) info on Rv2904c/rplS
Rv2051c/ppm1 (cc=0.558) info on Rv2051c/ppm1
Rv0736/rslA (cc=0.5513) info on Rv0736/rslA
Rv2869c/rip (cc=0.5271) info on Rv2869c/rip
Rv2603c/- (cc=0.4946) info on Rv2603c/-
Rv0410c/pknG (cc=0.4935) info on Rv0410c/pknG
Rv0324/- (cc=0.4924) info on Rv0324/-
Rv3715c/recR (cc=0.4668) info on Rv3715c/recR
Rv3245c/mtrB (cc=0.466) info on Rv3245c/mtrB
Rv2241/aceE (cc=0.4644) info on Rv2241/aceE

Correlation of Rv2135c/- with Rv2051c/ppm1

Normalized LFCs for Rv2135c/-:
(description and provenance of datasets)
Rv2135c/-Rv2051c/ppm1
Fe_supp_jason_reseq

2.559

3.73

low_pH_jason_reseq

-0.634

-1.474

NO_jason_reseq

-0.995

-0.339

B6_jason_reseq

-0.421

-1.713

MHCII_jason_reseq

-0.37

-1.194

Isoniazid02

-2.187

-1.961

Rifampicin4

-0.49

-3.476

Ethambutol3

2.38

-1.037

Meropenem3

-0.399

-0.379

Vancomycin16

0.424

-3.94

Rv2680_day32

0.0

-3.375

H37Rv_KO_MarP

-3.718

-4.593

hypoxia_3wks

-1.511

-3.166

hypoxia_6wks

-0.791

-2.328

glycerol

1.758

1.627

cholesterol

0.0

1.338

AJ

0.0

-1.76

Bibs02

0.0

-0.062

Bibs02c

0.0

-1.446

BL6

0.0

-0.509

BL6a

0.0

-1.125

BXD01

0.0

-1.183

BXD010

0.0

-0.727

BXD011

0.0

-0.8

BXD03

0.0

-0.094

BXD04

0.0

-0.855

BXD05

0.0

-0.764

BXD06

0.0

-1.213

BXD07

0.0

-0.708

BXD08

0.0

-1.208

BXD09

0.0

-1.168

CAST

0.0

-1.446

CCcont

2.382

2.086

DS01

0.0

-0.53

DS02

0.0

0.21

DS04

0.0

-0.888

DS0c

0.0

0.943

GP01

0.0

-1.167

GP02

0.0

-0.984

GP0c

0.0

-0.899

NOD

0.0

-1.149

NZO

0.0

-1.812

PWK

0.0

-0.524

H37Rv_KO_CtpC

0.0

1.204

H37Rv_KO_CtpD

0.0

0.402

H37Rv_KO_Rv1272

0.0

-0.44

H37Rv_KO_SugABC

0.099

0.211

H37Rv_KO_MbtN

0.196

-0.149

Trans05

0.0

-0.469

macrophage_unactivated

-0.761

0.65

IL1

-1.124

-0.914

Rapamycin

-1.163

0.328

Tcell

-1.235

0.515

GMCSF

-1.001

-0.636

IFNab

0.0

0.623

IFNg

-1.013

-0.644

IFNg_GMCSF1

-1.191

0.17

Rv1432_day32

0.0

-3.609

Rv1565c_day32

0.0

0.0

secA2_input

4.169

2.099

delta_Rv3594

-1.158

-2.155

delta_Rv3717

-2.555

-2.639

delta_Rv3811

-2.149

-2.501

delta_Rv0954

1.49

1.193

PonA1

2.001

2.433

EccD1_KO

-2.375

0.477

EspI_KO

-2.059

0.525

PE35_KO

0.067

-0.543

PPE68_KO

0.889

-0.141

glycerol2

-0.82

-2.149

lignocerate

-1.033

-2.276

oleate

-1.202

-4.353

phosphatidylcholine

-1.188

-0.892

acetate

0.69

0.244

glucAc

0.229

-0.209

Rv0950ko

1.658

-0.072

Rv1096ko

0.344

-0.072

Rv3684ko

1.346

0.157

delta_otsA_trehalose

1.021

0.111