Top 10 genes with highest correlation to Rv1957/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2404c/lepA | (cc=0.6113) | info on Rv2404c/lepA |
| Rv1956/higA | (cc=0.5998) | info on Rv1956/higA |
| Rv1963c/mce3R | (cc=0.5783) | info on Rv1963c/mce3R |
| Rv0190/- | (cc=0.5713) | info on Rv0190/- |
| Rv0119/fadD7 | (cc=0.5617) | info on Rv0119/fadD7 |
| Rv2609c/- | (cc=0.5544) | info on Rv2609c/- |
| Rv1590/- | (cc=0.5519) | info on Rv1590/- |
| Rv2140c/TB18.6 | (cc=0.5472) | info on Rv2140c/TB18.6 |
| Rv3041c/- | (cc=0.5442) | info on Rv3041c/- |
| Rv1568/bioA | (cc=0.539) | info on Rv1568/bioA |
Correlation of Rv1957/- with Rv1963c/mce3R
Normalized LFCs for Rv1957/-:
(description and provenance of datasets)
| Rv1957/- | Rv1963c/mce3R | |
| Fe_supp_jason_reseq | 1.407 | -0.74 |
| low_pH_jason_reseq | 3.15 | -0.069 |
| NO_jason_reseq | 2.964 | -0.567 |
| B6_jason_reseq | 0.409 | 0.044 |
| MHCII_jason_reseq | -0.92 | 0.876 |
| Isoniazid02 | 2.437 | -0.514 |
| Rifampicin4 | 2.071 | 1.064 |
| Ethambutol3 | 0.969 | 0.827 |
| Meropenem3 | 3.317 | 0.27 |
| Vancomycin16 | 0.287 | 0.395 |
| Rv2680_day32 | -1.63 | -0.554 |
| H37Rv_KO_MarP | 0.986 | -0.236 |
| hypoxia_3wks | -1.691 | -1.739 |
| hypoxia_6wks | -0.474 | -1.837 |
| glycerol | -1.315 | 0.19 |
| cholesterol | -0.606 | -2.14 |
| AJ | -2.336 | -1.0 |
| Bibs02 | -0.856 | -0.603 |
| Bibs02c | -1.087 | -0.532 |
| BL6 | -2.131 | -1.472 |
| BL6a | -1.029 | -1.274 |
| BXD01 | -2.293 | -2.266 |
| BXD010 | -0.784 | -0.35 |
| BXD011 | -0.617 | -1.445 |
| BXD03 | -1.054 | -1.652 |
| BXD04 | -2.107 | -2.063 |
| BXD05 | -1.474 | -1.706 |
| BXD06 | -0.981 | -1.692 |
| BXD07 | -2.359 | -2.046 |
| BXD08 | -2.595 | -2.219 |
| BXD09 | -1.161 | -0.797 |
| CAST | -2.132 | -2.017 |
| CCcont | -0.531 | 0.322 |
| DS01 | -1.312 | -1.848 |
| DS02 | -2.382 | -1.701 |
| DS04 | -1.303 | -1.148 |
| DS0c | -1.205 | -0.889 |
| GP01 | -2.156 | -1.967 |
| GP02 | -1.976 | -1.582 |
| GP0c | -0.587 | -0.98 |
| NOD | -2.603 | -0.415 |
| NZO | -1.696 | -0.818 |
| PWK | -1.921 | -1.655 |
| H37Rv_KO_CtpC | -0.392 | -1.712 |
| H37Rv_KO_CtpD | -1.14 | -1.437 |
| H37Rv_KO_Rv1272 | -1.73 | -0.907 |
| H37Rv_KO_SugABC | -0.997 | -0.538 |
| H37Rv_KO_MbtN | 2.194 | -0.32 |
| Trans05 | -1.28 | -0.741 |
| macrophage_unactivated | -2.004 | -1.36 |
| IL1 | -0.3 | -1.875 |
| Rapamycin | -0.822 | -2.167 |
| Tcell | 1.372 | -1.613 |
| GMCSF | -1.883 | -1.138 |
| IFNab | -2.533 | -0.29 |
| IFNg | -0.716 | -1.502 |
| IFNg_GMCSF1 | -0.751 | -1.986 |
| Rv1432_day32 | -2.78 | -1.356 |
| Rv1565c_day32 | -3.941 | -1.275 |
| secA2_input | 1.324 | -0.366 |
| delta_Rv3594 | 1.947 | 0.766 |
| delta_Rv3717 | 4.691 | 0.135 |
| delta_Rv3811 | 1.893 | 1.09 |
| delta_Rv0954 | 1.749 | -0.088 |
| PonA1 | -0.819 | 0.171 |
| EccD1_KO | -0.069 | -1.253 |
| EspI_KO | -0.12 | -1.668 |
| PE35_KO | 1.059 | 0.621 |
| PPE68_KO | 1.648 | 0.323 |
| glycerol2 | -0.601 | -1.868 |
| lignocerate | -1.88 | -1.83 |
| oleate | -1.948 | -2.504 |
| phosphatidylcholine | -1.852 | -1.867 |
| acetate | -0.291 | 0.851 |
| glucAc | 0.254 | 0.758 |
| Rv0950ko | 0.784 | -0.172 |
| Rv1096ko | -0.247 | -0.998 |
| Rv3684ko | 0.675 | -0.717 |
| delta_otsA_trehalose | 0.514 | -0.248 |