Top 10 genes with highest correlation to Rv1957/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2404c/lepA | (cc=0.6113) | info on Rv2404c/lepA |
| Rv1956/higA | (cc=0.5998) | info on Rv1956/higA |
| Rv1963c/mce3R | (cc=0.5783) | info on Rv1963c/mce3R |
| Rv0190/- | (cc=0.5713) | info on Rv0190/- |
| Rv0119/fadD7 | (cc=0.5617) | info on Rv0119/fadD7 |
| Rv2609c/- | (cc=0.5544) | info on Rv2609c/- |
| Rv1590/- | (cc=0.5519) | info on Rv1590/- |
| Rv2140c/TB18.6 | (cc=0.5472) | info on Rv2140c/TB18.6 |
| Rv3041c/- | (cc=0.5442) | info on Rv3041c/- |
| Rv1568/bioA | (cc=0.539) | info on Rv1568/bioA |
Correlation of Rv1957/- with Rv1956/higA
Normalized LFCs for Rv1957/-:
(description and provenance of datasets)
| Rv1957/- | Rv1956/higA | |
| Fe_supp_jason_reseq | 1.407 | -0.742 |
| low_pH_jason_reseq | 3.15 | 1.464 |
| NO_jason_reseq | 2.964 | 2.875 |
| B6_jason_reseq | 0.409 | 0.376 |
| MHCII_jason_reseq | -0.92 | -0.581 |
| Isoniazid02 | 2.437 | 2.526 |
| Rifampicin4 | 2.071 | 1.985 |
| Ethambutol3 | 0.969 | 0.595 |
| Meropenem3 | 3.317 | 2.692 |
| Vancomycin16 | 0.287 | 0.202 |
| Rv2680_day32 | -1.63 | -0.038 |
| H37Rv_KO_MarP | 0.986 | -0.137 |
| hypoxia_3wks | -1.691 | -1.531 |
| hypoxia_6wks | -0.474 | -1.115 |
| glycerol | -1.315 | -0.778 |
| cholesterol | -0.606 | -1.263 |
| AJ | -2.336 | -0.272 |
| Bibs02 | -0.856 | -1.34 |
| Bibs02c | -1.087 | -1.155 |
| BL6 | -2.131 | -0.652 |
| BL6a | -1.029 | -1.72 |
| BXD01 | -2.293 | -1.387 |
| BXD010 | -0.784 | -1.225 |
| BXD011 | -0.617 | -1.202 |
| BXD03 | -1.054 | -2.879 |
| BXD04 | -2.107 | -0.425 |
| BXD05 | -1.474 | -1.144 |
| BXD06 | -0.981 | -1.391 |
| BXD07 | -2.359 | -1.324 |
| BXD08 | -2.595 | -2.556 |
| BXD09 | -1.161 | -1.676 |
| CAST | -2.132 | -0.302 |
| CCcont | -0.531 | -1.021 |
| DS01 | -1.312 | -0.778 |
| DS02 | -2.382 | -0.458 |
| DS04 | -1.303 | -1.098 |
| DS0c | -1.205 | -0.784 |
| GP01 | -2.156 | -0.015 |
| GP02 | -1.976 | -2.073 |
| GP0c | -0.587 | -1.835 |
| NOD | -2.603 | -0.295 |
| NZO | -1.696 | -0.152 |
| PWK | -1.921 | -0.374 |
| H37Rv_KO_CtpC | -0.392 | -0.599 |
| H37Rv_KO_CtpD | -1.14 | -1.943 |
| H37Rv_KO_Rv1272 | -1.73 | -0.955 |
| H37Rv_KO_SugABC | -0.997 | -1.526 |
| H37Rv_KO_MbtN | 2.194 | 0.156 |
| Trans05 | -1.28 | -1.391 |
| macrophage_unactivated | -2.004 | -2.557 |
| IL1 | -0.3 | -2.933 |
| Rapamycin | -0.822 | -3.339 |
| Tcell | 1.372 | -0.899 |
| GMCSF | -1.883 | -2.448 |
| IFNab | -2.533 | -3.997 |
| IFNg | -0.716 | -2.189 |
| IFNg_GMCSF1 | -0.751 | -1.939 |
| Rv1432_day32 | -2.78 | 1.446 |
| Rv1565c_day32 | -3.941 | -1.537 |
| secA2_input | 1.324 | 0.194 |
| delta_Rv3594 | 1.947 | 0.419 |
| delta_Rv3717 | 4.691 | 1.263 |
| delta_Rv3811 | 1.893 | 0.983 |
| delta_Rv0954 | 1.749 | -0.239 |
| PonA1 | -0.819 | -0.254 |
| EccD1_KO | -0.069 | -0.257 |
| EspI_KO | -0.12 | -0.339 |
| PE35_KO | 1.059 | -0.134 |
| PPE68_KO | 1.648 | -0.301 |
| glycerol2 | -0.601 | 1.035 |
| lignocerate | -1.88 | -0.513 |
| oleate | -1.948 | -1.365 |
| phosphatidylcholine | -1.852 | -0.374 |
| acetate | -0.291 | 1.142 |
| glucAc | 0.254 | 1.641 |
| Rv0950ko | 0.784 | -0.561 |
| Rv1096ko | -0.247 | -0.383 |
| Rv3684ko | 0.675 | 0.36 |
| delta_otsA_trehalose | 0.514 | -0.05 |